And only thanks to pigments, life on Earth is possible. Pigments were the first molecules that microbes used to harvest sunlight. Microbes could then transform the light energy into chemical energy and produce oxygen.

Even the brown-reddish haemoglobin in your blood is an essential pigment as it transports oxygen within your body. Also for bacteria, pigments and their colours have life-saving functions. Here, we will look at how biopigments colour the bacterial world and what bacteria gain from producing them.

Bacterial pigments bring colour to the world of bacteria

Biopigments are molecules with complex chemical structures and at least one excited electron. Depending on the electron’s arrangement, a pigment absorbs light at a specific wavelength. It reflects the colour of the unabsorbed wavelength, which gives the pigment its colour.

As the function of pigments depends on the incoming light, sunlight plays a crucial role for bacteria with pigments. By adding certain pigments to their membrane, bacteria can adapt to environments that are directly affected by sunlight or the lack of it. This gives them an advantage over those bacteria that lack these pigments.

However, some bacteria also use pigments for other purposes, which we discuss further in this article.

Microbes harness photosynthetic power with colourful pigments

Sunlight is incredibly powerful since each light photon contains energy. Bacteria adapted to harvest energy from sunlight with special pigments.

Pigments can capture the incoming photon and transfer its energy to other molecules. This process transforms the incoming light energy into chemical energy. So-called phototrophic microbes are those that gain their energy from light.

The best-known example of a photosynthetic biopigment is chlorophyll in plants, algae and cyanobacteria. Cyanobacteria produce several complexes of bacteriochlorophylls to absorb blue and red light. As the green light is not absorbed, it is reflected, which is why chlorophyll – and thus cyanobacteria, algae and plants – are green.

Some bacteria harvest more light by producing several pigments of different types. They then arrange them in an optimal formation according to the incoming light.

For example, carotenoids capture energy in the green-blueish range and pass it on to the associated chlorophyll. Together, these photosynthetic complexes absorb light energy from almost the entire wavelength spectrum.

Halophilic bacteria and archaea are microbes that produce carotenoids to capture sunlight. You may have seen salt ponds with a reddish colour. This comes from the red and pink-coloured archaea Halobacteria, bacteria Salinibacter or algae Dunaliella. Thanks to their colourful carotenoids, these microbes adapt to salty waters that are exposed to direct sunlight.

Cyanobacteria in the deep sea, lagoons, lakes, ponds or rivers produce similar molecules to chlorophyll. These absorb the blue-green light in water, which allows these bacteria to survive in these dark environments. If you have ever seen a lagoon shining yellow or orange, this was probably due to the colourful cyanobacteria inside.

Bacterial biopigments protect from too much light

As light is full of energy, bacteria also need to protect themselves from getting burned. For this, they produce pigments that take up the excess light energy. Like this, the main photosynthetic complex does not get damaged.

Carotenoids and xanthomonadins are the colourful sun blockers of the microbial world. These molecules absorb high-energy light to protect chlorophyll from damage. Over 600 different carotenoids were described and they usually come in yellow-orange-reddish colours.

The yellow xanthomonadins absorb wavelengths within the energy-rich UV spectrum. Bacteria like Xanthomonas campestris live on plant leaves where they are exposed to direct sunlight. Hence, their yellow xanthomonadin coats are like self-made sunblocks protecting the bacteria.

Also, the pigment melanin shields the producing cell from energy-rich sunlight. Many bacteria living in the soil or bacterial spores produce these pigments. Here, melanin absorbs light from a wide range of the light spectrum to protect the inner of the cell. Hence, melanin-producing bacteria, like Vibrio cholerae and Streptomyces bacteria, are brown or black.

Bacterial pigments let electrons flow and save energy

Since bacterial pigments allow electrons to flow, they can also be energy conductors. Hence, some pigments are important components of energy complexes and synthesis machineries.

For example, yellow flavins are pigments involved in cellular metabolism. The main flavin is riboflavin, which you may know as vitamin B12. This essential molecule – produced only by bacteria – allows our bodies to work.

Phenazines are unique bacterial pigments with yellowish-green fluorescent colours. Pyocyanin, exclusively produced by Pseudomonas bacteria, shuttles electrons – and thus energy – during the respiration process. Hence, pyocyanin is essential for Pseudomonas as it keeps the bacteria healthy and alive.

Some biopigments have anti-oxidant effects

Bacterial pigments don’t just help adapt to external environmental conditions like the sunlight. They also guard the inner bacterial cell from stressful situations.

Excess or uncaptured energy or escaped light photons can react with oxygen. This process produces so-called oxygen radicals, which can damage molecules inside the bacterium. Known as oxidative stress, oxygen radicals can even become life-threatening for bacteria.

Carotenoids and xanthomonadins protect bacterial cells from oxidative stress. These pigments transform the free oxygen radicals into harmless molecules. Since carotenoids and their product vitamin A have similar functions in humans, it is only healthy for us to take up a lot of these with our diet.

In the bacterium Gemmatimonas aurantiaca, orange carotenoids also work like sunscreen and oxidative shield. These pigments both give the bacterium its bright orange colour and protect it from too much sunlight.

Bacteria combat microbial enemies with coloured pigments

As night falls, many bacterial pigments reveal their darker sides. They become important weapons for microbial warfare. Without sunlight, several pigments take on roles as virulence factors and antimicrobials as they mess up cells’ energy and oxygen household.

For example, prodigiosin is the red weapon of Serratia marcescens. As prodigiosin inhibits the growth of several bacterial, fungal and insecticidal pathogens, Serratia marcescens is an important biocontrol bacterium of plant disease.

You may have seen prodigiosin-producing Serratia bacteria on contaminated food. They develop these red, blood-like dots.

Violacein is a purple pigment with anti-viral, anti-bacterial and anti-cancer properties. For example, Chromobacterium violaceum sends membrane bubbles filled with violacein to kill bacterial enemies.

Similarly, Janthinobacterium lividum protects frogs and salamanders as it lives on their skins. Here, the bacterium throws violacein at pathogenic fungi that would otherwise infect and harm the animals.

Pyocyanin, the fluorescent electron-shuttling pigment in Pseudomonas, is also very sensitive to oxygen. It even turns Pseudomonas aeruginosa cultures in the lab blueish just by shaking and airing them.

Yet, not all bacteria have an appropriate coping mechanism for pyocyanin. Hence, these bacteria suffer oxidative stress when they come into contact with this pigment. This is why Pseudomonas uses pyocyanin also to fight bacterial and fungal enemies.

Vivid pigments colour the bacterial world

The Bacterial World is colourful – one of this blog’s taglines. You may have asked yourself what this is about and why bacteria have so many different colours.

From the dazzling pink of halophilic microorganisms to the sunny yellow of phytopathogens, bacterial pigments give their producers shiny and vibrant colours. But thanks to the colourful biopigments, bacteria also gain abilities to survive in new and challenging environments.

Some of these bacterial pigments are essential for us humans and even life on Earth. From some of these colourful biopigments, we produce vitamins that we need for our own metabolism. Also, every oxygen molecule that you just took up with your last breath, at some point, was transformed by a bacterial chlorophyll pigment.

So, I guess it is yet again time to be grateful to bacteria and their vibrant and life-enabling activities!

The post Creating the colours of the rainbow: Bacteria and the vibrant world of pigments appeared first on Bacterialworld.
Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world

And some of these microbes learned to adapt to these special – or extreme – conditions. They can’t even cope in normal environments.

Extreme conditions or extreme environments can be anything that we consider uninhabitable for us. This can be extremely high or low temperatures, extremely high or low pressure, radiation or toxicity.

Some of these microbes actually love the extremes. And these so-called extremophiles have special superpowers that help them survive in hostile places – like the bottom of the sea.

What are extremophiles

For example, so-called thermophiles live and grow at temperatures above 50 °C and hyperthermophiles even at temperatures above 80 °C. On the other hand, psychrophiles love temperatures below 10 °C. Plus, researchers keep finding interesting new species in the permafrost soils of the Arctic and Antarctic.

Some extremophiles also have superpowers to survive in extremely salty or acidic places like saline lakes or acid mine drainages. And other extremophile microbes grow in places with high metallic or toxic concentrations or high pressure like at the deep sea of the ocean.

These extreme environments put a lot of pressure on microbes, which means they need to adapt to these conditions or they won’t survive. Hence, in these extreme environments, microbes are mutating more often or exchanging more DNA with other species to learn to cope with these challenging conditions.

Here, we will look at microbes and extremophiles that live and grow in the deep sea. In this dark place, microbial communities have developed fascinating mechanisms to adapt. And from here, they can also impact our global climate.

Extremophiles living in the deep sea

Imagine the bottom of the sea about 30 km underwater: It is dark since sunlight cannot shine this far. It is 2 – 3 °C cold while close to hydrothermal vents, it can be up to 400 °C all of a sudden. And the pressure at the sea bottom is extremely high since all that water is extremely heavy pushing everything down.

And yet, the bottom of the sea is full of happily-living, growing microbes that enjoy their times together, feeding each other and stabilising our ecology. These microbes can swim around in the open sea. Most of them attach to dirt or sediment particles on which they form biofilms.

As you can imagine, this environment doesn’t offer much food or energy. So, it is incredibly important that microbes interact with each other here to exchange meals and information. That’s why many microbes in the deep sea feed each other with one microbe producing a special substrate that another microbe likes to eat.

These microbial food webs are very important for our global nutrient cycles as deep-sea microbes sequester atmospheric gasses, like CO2, and degrade contaminants and pollutants. For example, thermophilic bacteria like Desulfovulcanus ferrireducens and Oceanithermus profundus live close to hydrothermal vents which is why they grow best at about 65 °C. These extremophiles get their energy from hydrogen gas and organic acids that swim in the ocean.

Also, during oil spillages in the ocean over recent years, researchers found many bacteria and fungi that can eat and degrade oil or petroleum. Hence, their need for food cleans our oceans of these harmful components.

How extremophiles adapt to the deep sea

The deeper you are in the ocean, the less oxygen is available for microbes to breathe. Hence, microbes had to become creative about where to get their energy from. For example, Desulfovulcanus ferrireducens mainly uses iron components for respiration and growth while Oceanithermus profundus prefers nitrogen gas. All over the oceans, there are SO MANY microbes eating these iron components and nitrogen gas. Hence, all their metabolic activities impact the iron and nitrogen cycles of the whole planet.

But microbes and bacteria in the deep sea did not only have to adapt their meals to these conditions. Deep-sea extremophiles also had to develop mechanisms to withstand the pressure and the cold of this hostile place.

At very low temperatures, proteins often get out of shape so that they lose their functions. This can mess up the whole bacterial cell, which is why psychrophilic bacteria have so-called chaperones that constantly check the bacterium for proteins that are out of shape. These chaperones then help the protein get back into normal shape and thus to its normal functioning state.

Extremophile bacteria have different membranes

Another way to adapt to hot and cold temperatures is for bacteria to change their membranes. As you might know from experience, fat gets solid when it’s cold and fluid when it’s hot. And since bacterial membranes are mainly made out of lipids and fats, thermophilic and psychrophilic bacteria need to make sure their membranes can cope with the extreme temperatures.

To prevent membranes from becoming too fluid and leaky at high temperatures, thermophilic microbes solidify their membranes. On the contrary, psychrophilic bacteria like Psychromonas and Marinomonas need to make sure that their membranes stay flexible at cold temperatures.

Luckily, this special cold-adapted membrane also helps bacteria withstand the high pressure in the deep sea. And to counteract the pressure inside the cell, piezophile bacteria produce a lot of stuff and basically crowd their cells with proteins. This aims to keep the cell pressure inside high against the high pressure from the outside.

However, investigating such high pressure is extremely difficult in the lab. That’s why researchers still don’t know much about the pressure adaption of extremophiles in the deep sea.

What we can learn from extremophiles in the deep sea

Even though we still don’t know much about the fascinating microbial life underwater, researchers are optimistic that they will find lots of helpful microbes. Whether adapted to the cold or to the heat, deep-sea microbes have incredible mechanisms to grow at extreme temperatures.

This means they contain proteins that function perfectly on either side of the temperature spectrum. So, researchers hope that we could use that knowledge to design tailor-made proteins for our daily lives. We could for example use them in households or in biotechnology applications, for example, to improve cleaning efficiency or reduce energy input.

Another important aspect is to explore how microbes in the deep sea affect our global climate. With climate change, our oceans are getting warmer and thus they contain less oxygen. This means that also microbes are likely adapting to these changes which in turn influences the global climate.

Hence, understanding how microbes cope with the conditions in the deep sea helps us comprehend the full impact of climate change. This might then give us an idea about how to prevent more damage to our beautiful planet. With the help of microbes.

The post Even at the dark and cold bottom of the sea, microbes flourish appeared first on Bacterialworld.
Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world

Gladly, we learned to use some of these bacterial superpowers to improve our own lives. This means that bacteria and their superpowers are pretty much everywhere you look. You can find their impact in the food you eat, the medicine you take or the bioplastics you use.

So, yes, you probably use microbes and their superpowers daily without even realising. In this article, we listed 20 of the most fascinating bacterial superpowers and how they help not only bacteria but also us.

Bacteria know exactly where they are going

Bacteria have a so-called flagellum with which they can swim in liquids. This flagellum works together with the super responsive chemotaxis system.

This fascinating mechanism helps bacteria understand where beneficial nutrients or harmful compounds are. The bacterium then decides to swim towards or away from that compound. Chemotaxis is thus essential for the survival of bacteria.

Read Chemotaxis helps bacteria move towards goodies

Bacteria are high-speed swimmers

With the above-mentioned flagella, bacteria can move in liquids. When they rotate their flagella, they can swim in one direction which helps them find nutrients or escape harmful situations.

Interestingly, the Olympic recordist for 50 metres freestyle swims 1.17 body lengths per second. However, the bacterium Escherichia coli swims 15 body lengths per second and the tiny Bdellovibrio bacteriovorus swims even 10x faster, moving 160 body lengths in one second.

Read Bacteria wrap themselves in their swimming flagella

Floating veils for large bacteria to attach to and fetch nutrients

Bacteria produce oxygen and give superpowers to everyone

This may sound a little trivial because we take oxygen for granted. But bacteria known as cyanobacteria first produced oxygen on this planet. A large part of the atmosphere’s oxygen today is produced in oceans by these bacteria and other single-celled organisms.

You can also find more on cyanobacteria in this article.

Bacteria can produce electricity

Some bacteria can align into long filaments – so-called cable bacteria. This alignment allows bacteria to produce electrons on one side by oxidizing metals. They can then transport the electrons along the filament. Bacteria on the other side of the filament use these electrons for oxygen reduction.

Thus, bacteria produce an electric current within certain water sediments, which researchers measured. Maybe one day they can use these filaments in some kind of seawater-based batteries.

Read Cable bacteria – unusual bacteria conduct electricity

Bacteria use superpowers to align to the magnetic fields

Some bacteria, like the Magnetospirillum, that live in water, have so-called magnetosomes. These are storage units for iron crystal-like structures. The iron inside can align with a magnetic field and even along the magnetic Earth field.

These aligned magnetosomes then give magnetic momentum to the bacterium. Based on that, the bacterium aligns itself with the magnetic field and can find an optimal location in its environment.

Read How bacteria read and follow the Earth’s magnetic field

Bacteria can reduce and produce gold – highly valuable bacterial superpowers

In gold mines in Australia, researchers found bacteria that form biofilms on gold particles. For example, the bacteria Delftia acidovorans and Cupriavidus metallidurans can reduce toxic gold-ions to elementary gold.

This means that these bacteria are directly involved in the biogeochemical cycling of this precious metal.

Bacteria kill their competitors

To survive and grow, bacteria have learned to outcompete other bacteria and microbes. For this, they developed fascinating nanoweapons that kill their competitors and leave them as the sole survivor.

Interestingly, there are several different of these bacterial nanoweapons, all working slightly differently. Read more about this bacterial superpower:

Bacterial killer weapons as biocontrol to protect plants

Nanoweapons make the killer differences in bacterial siblings

Understanding the type 6 secretion system spike of a bacterial killer machine

Bacteria and contact-dependent growth inhibition: Death on a stick

Bacteria have various superpowers to protect their hosts

Microbes and bacteria live in and around bigger organisms like the human body, plants or animals. They developed fascinating mechanisms to protect their hosts and support them in different ways.

Bacteria might help them digest food, help them grow or fight off harmful intruders. For example, our bodies would not work without the microbiome – all those microbes and bacteria in and on us. Read more about the human microbiome:

How bacteria in your gut microbiome defend pathogens

Bacteria on your hands strengthen your unique skin microbiome

“Follow your gut instinct” – how your gut microbiome influences your mental health

How a healthy gut microbiome protects you and how to keep its superpower

Bacteria and their superpowers light the way

Some bacteria have the superpower to produce light in a process called bioluminescence.

Interestingly, bioluminescent bacteria often live with other organisms in symbiosis. For example, some bioluminescent bacteria occupy the lure of the female anglerfish. This fish also uses them as a fishing rod for hunting.

Bacteria withstand heat and cold

Whether too cold or too hot. Some bacteria really don’t care.

Certain bacteria can survive at temperatures as low as -20°C, which is why they are called hypothermophiles. On the contrary, other bacteria live in hot water steams up to 122°C. Similarly, these bacteria are hyperthermophiles.

These extremophiles have special repair enzymes to keep their DNA and cell envelope intact even at such extreme temperatures. Consequently, some of these enzymes are being used in research and are daily tools in each research lab. Learn more about extremophiles:

Even at the dark and cold bottom of the sea, microbes flourish

Bacteria tolerate harmful radiation

Another extreme-loving bacterium: the radiotolerant Deinococcus radiodurans. This bacterium has very efficient proteins to protect its DNA. Plus, it produces special DNA repair machines. They super quickly recognize and repair any damage in the DNA after exposure to radiation.

With these mechanisms, these extremophiles can survive exposure to ionizing radiation. Some bacteria even survive in the cooling systems of nuclear reactors.

Bacteria go to sleep by forming spores

Some bacteria can form so-called spores which are bacteria “on hold”.

Bacteria go into this state in times of greatest starvation or drought. Their aim is to keep its genetic material safe while turning down all non-essential functions. In this state, bacteria do not have an active metabolism nor do they interact with the environment. They solely wait for better times to come until nutrients become available again.

Bacteria produce some of our favourite foods

Did you know that bacteria produce many of the foods you are consuming? By fermenting sugars to alcohols or acids, lactic bacteria and some yeasts give a delicious taste to common foods like cheese, yoghurt and kefir, kombucha, kimchi and sauerkraut, beer and wine, as well as chocolate.

Reason enough to be grateful for bacterial superpowers to produce amazing foods.

Bacteria can endure high pressure in the deep sea

Researchers found bacteria that can live up to 10 km deep inside the ocean. Yes!

This means these bacteria can endure pressures of up to 100 MPa. But, researchers don’t know yet how these bacterial cells function at such high pressure. However, they think that the proteins inside these bacteria form some kind of super glue-like complexes. This would then make the bacterial content more viscous to endure the pressure.

Read Even at the dark and cold bottom of the sea, microbes flourish

Bacteria produce oil

Many microorganisms, amongst them bacteria, produce natural oils which is why they are called oleaginous microorganisms. Mainly algae, bacteria and yeasts can produce biodiesel, while fungi, and some algae can produce healthy omega-3 fatty acids.

Now, researchers focus on engineering these organisms to enhance the accumulation of produced lipids, biodiesel and omega-3 fatty acids.

Bacteria repair their DNA super efficiently

Bacteria have to endure all sorts of environmental stresses, for example, temperature changes, antibiotics or challenges by competitors. To ensure that under all circumstances, their DNA remains undamaged after an attack, bacteria developed incredibly efficient DNA repair and fixing machines. These machines recognise any small damage in the DNA.

Read

How does Salmonella deal with stress – a journey through the human body

Bacteria destroy proteins to understand the environment

Bacteria nucleate ice and let it rain

Some bacteria can trigger water to form ice crystals at temperatures close to the melting point. One of these bacteria is Pseudomonas syringae.

This bacterium has special proteins on its outer surface that interact with water and triggers ice formation. These bacteria are even used to produce artificial snow in winter sports areas around the world.

Bacteria keep our environment clean

Some bacteria surely love their heavy metals! Many bacteria have special enzymes to reduce toxic metal ions. These bacteria are even used to clean waste in industrial waters or mines and are the basis for green chemistry.

Read Microbial bioremediation: microbes cleaning-up our toxic messes

Bacteria can change our blood types for a short amount of time

Some bacteria live in our blood and when they get hungry, they start cleaving off sugar molecules from our red blood cells. While this is not harmful to us at all, in clinical tests, this may look like a different blood type than our original one.

However, as soon as the body produces new blood cells, they will have our original sugars and therefore our normal blood type.

Read Bacteria changing blood types

Some bacteria are super small

Super small but super powerful!

While bacteria have all these superpowers, I am most amazed by the fact that they are so tiny and yet SO powerful. All these superpowers in such a small box!

To actually see bacteria, we need microscopes. And to have really good photographs of them, we then need EXTREMELY good microscopes. Look at the bacterial cells in the pictures here! They are just about 2 micrometres long…

Thank bacteria and their superpowers

After having read this list of bacterial superpowers, are you even more amazed by our bacterial friends now? Which of these bacterial superpowers is your favourite? Which of them would you like to learn more about? Let us know in the comment section below or send us an email with your question. We’re looking forward to hearing from you!

The post The incredible superpowers of bacteria: unveiling nature’s tiny heroes appeared first on Bacterialworld.
Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world