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	<title>About Bacterial stress responses on Bacterialworld</title>
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	<description>A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</description>
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	<title>About Bacterial stress responses on Bacterialworld</title>
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		<title>Creating the colours of the rainbow: Bacteria and the vibrant world of pigments</title>
		<link>https://sarahs-world.blog/bacteria-and-the-colourful-world-of-pigments/</link>
					<comments>https://sarahs-world.blog/bacteria-and-the-colourful-world-of-pigments/#respond</comments>
		
		<dc:creator><![CDATA[Sarah]]></dc:creator>
		<pubDate>Tue, 09 Jan 2024 19:01:54 +0000</pubDate>
				<category><![CDATA[Bacteria and their environment]]></category>
		<category><![CDATA[Animals]]></category>
		<category><![CDATA[Antibiotics]]></category>
		<category><![CDATA[Bacterial membrane]]></category>
		<category><![CDATA[Bacterial stress response]]></category>
		<category><![CDATA[Extremophiles]]></category>
		<category><![CDATA[Fungi]]></category>
		<category><![CDATA[Physiology]]></category>
		<category><![CDATA[Plants]]></category>
		<guid isPermaLink="false">https://sarahs-world.blog/?p=5036</guid>

					<description><![CDATA[<p>Our world as well as the bacterial world are full of vibrant colours. These colours exist thanks to biopigments; molecules able to capture light and reflect the corresponding colour. Many organisms, as well as bacteria, learned to use biopigments to harvest energy from sunlight, fight foes and adapt to new and challenging environments. Read on to learn what makes the bacterial world so colourful and why biopigments are the Earth’s life savers.</p>
<p>The post <a href="https://sarahs-world.blog/bacteria-and-the-colourful-world-of-pigments/">Creating the colours of the rainbow: Bacteria and the vibrant world of pigments</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
]]></description>
										<content:encoded><![CDATA[
<p class="wp-block-paragraph">The world around us is colourful. Wherever you look, you see various colours of different shades and hues.</p>



<p class="wp-block-paragraph">And only thanks to pigments, life on Earth is possible. Pigments were the first molecules that microbes used to harvest sunlight. Microbes could then transform the light energy into chemical energy and produce oxygen.</p>



<p class="wp-block-paragraph">Even the brown-reddish haemoglobin in your blood is an essential pigment as it transports oxygen within your body. Also for bacteria, pigments and their colours have life-saving functions. Here, we will look at how biopigments colour the bacterial world and what bacteria gain from producing them.</p>



<h2 class="wp-block-heading">Bacterial pigments bring colour to the world of bacteria</h2>



<p class="wp-block-paragraph">Biopigments are molecules with complex chemical structures and at least one excited electron. Depending on the electron&#8217;s arrangement, a pigment absorbs light at a specific wavelength. It reflects the colour of the unabsorbed wavelength, which gives the pigment its colour.</p>



<p class="wp-block-paragraph">As the function of pigments depends on the incoming light, <a href="https://doi.org/10.1002%2Fbab.2170" target="_blank" rel="noreferrer noopener">sunlight plays a crucial role for bacteria with pigments</a>. By adding certain pigments to their <a href="https://sarahs-world.blog/tag/bacterial-membrane/" target="_blank" rel="noreferrer noopener">membrane</a>, bacteria can adapt to environments that are directly affected by sunlight or the lack of it. This gives them an advantage over those bacteria that lack these pigments.</p>



<p class="wp-block-paragraph">However, some bacteria also use pigments for other purposes, which we discuss further in this article.</p>



<h2 class="wp-block-heading">Microbes harness photosynthetic power with colourful pigments</h2>



<p class="wp-block-paragraph">Sunlight is incredibly powerful since each light photon contains energy. Bacteria adapted to harvest energy from sunlight with special pigments.</p>



<p class="wp-block-paragraph">Pigments can capture the incoming photon and transfer its energy to other molecules. This process transforms the incoming light energy into chemical energy. So-called phototrophic microbes are those that gain their energy from light.</p>



<p class="wp-block-paragraph">The best-known example of a photosynthetic biopigment is chlorophyll in plants, algae and cyanobacteria. <a href="https://doi.org/10.1016/j.fct.2018.08.002" target="_blank" rel="noreferrer noopener">Cyanobacteria produce several complexes of bacteriochlorophylls</a> to absorb blue and red light. As the green light is not absorbed, it is reflected, which is why chlorophyll &#8211; and thus cyanobacteria, algae and plants &#8211; are green.</p>



<p class="wp-block-paragraph">Some bacteria harvest more light by producing several pigments of different types. They then arrange them in an optimal formation according to the incoming light.</p>



<p class="wp-block-paragraph">For example, carotenoids capture energy in the green-blueish range and pass it on to the associated chlorophyll. Together, these photosynthetic complexes absorb light energy from almost the entire wavelength spectrum.</p>



<p class="wp-block-paragraph">Halophilic bacteria and archaea are microbes that produce <a href="https://doi.org/10.3390%2Fmd17090524" target="_blank" rel="noreferrer noopener">carotenoids to capture sunlight.</a> You may have seen salt ponds with a reddish colour. This comes from the red and pink-coloured archaea <em>Halobacteria,</em> bacteria <em>Salinibacter</em> or algae <em>Dunaliella.</em> Thanks to their colourful carotenoids, these microbes adapt to salty waters that are exposed to direct sunlight.</p>



<p class="wp-block-paragraph">Cyanobacteria in the deep sea, lagoons, lakes, ponds or rivers produce similar molecules to chlorophyll. These absorb the blue-green light in water, which allows these <a href="https://sarahs-world.blog/extremophiles-flourish-at-deep-sea/" target="_blank" rel="noreferrer noopener">bacteria to survive in these dark environments</a>. If you have ever seen a lagoon shining yellow or orange, this was probably due to the colourful cyanobacteria inside.</p>



<h2 class="wp-block-heading">Bacterial biopigments protect from too much light</h2>



<p class="wp-block-paragraph">As light is full of energy, bacteria also need to protect themselves from getting burned. For this, they produce pigments that take up the excess light energy. Like this, the main photosynthetic complex does not get damaged.</p>



<p class="wp-block-paragraph">Carotenoids and xanthomonadins are the colourful sun blockers of the microbial world. These molecules absorb high-energy light to protect chlorophyll from damage. Over 600 different carotenoids were described and they usually come in yellow-orange-reddish colours.</p>



<p class="wp-block-paragraph">The <a href="https://doi.org/10.1094/MPMI-11-19-0326-CR" target="_blank" rel="noreferrer noopener">yellow xanthomonadins absorb wavelengths within the energy-rich UV spectrum</a>. Bacteria like <em>Xanthomonas campestris</em> live on plant leaves where they are exposed to direct sunlight. Hence, their <a href="https://sarahs-world.blog/plant-pathogenic-bacteria/" target="_blank" rel="noreferrer noopener">yellow xanthomonadin coats are like self-made sunblocks protecting the bacteria</a>.</p>



<figure class="wp-block-image aligncenter size-large is-resized"><img fetchpriority="high" decoding="async" width="791" height="1024" src="https://sarahs-world.blog/wp-content/uploads/X_xanthomonas_campestris_no_BG-791x1024.jpg" alt="" class="wp-image-3720" style="width:453px;height:auto" srcset="https://sarahs-world.blog/wp-content/uploads/X_xanthomonas_campestris_no_BG-791x1024.jpg 791w, https://sarahs-world.blog/wp-content/uploads/X_xanthomonas_campestris_no_BG-232x300.jpg 232w, https://sarahs-world.blog/wp-content/uploads/X_xanthomonas_campestris_no_BG-768x994.jpg 768w, https://sarahs-world.blog/wp-content/uploads/X_xanthomonas_campestris_no_BG-1187x1536.jpg 1187w, https://sarahs-world.blog/wp-content/uploads/X_xanthomonas_campestris_no_BG.jpg 924w" sizes="(max-width: 791px) 100vw, 791px" /></figure>



<p class="wp-block-paragraph">Also, the pigment melanin shields the producing cell from energy-rich sunlight. Many bacteria living in the soil or bacterial spores produce these pigments. Here, melanin absorbs light from a wide range of the light spectrum to protect the inner of the cell. Hence, melanin-producing bacteria, like <em>Vibrio cholerae</em> and <em>Streptomyces</em> bacteria, are brown or black.</p>



<h2 class="wp-block-heading">Bacterial pigments let electrons flow and save energy</h2>



<p class="wp-block-paragraph">Since bacterial pigments allow electrons to flow, they can also be energy conductors. Hence, some pigments are important components of energy complexes and synthesis machineries.</p>



<p class="wp-block-paragraph">For example, yellow flavins are pigments involved in cellular metabolism. The main flavin is riboflavin, which you may know as vitamin B12. This essential molecule &#8211; produced only by bacteria &#8211; allows our bodies to work.</p>



<p class="wp-block-paragraph">Phenazines are unique bacterial pigments with yellowish-green fluorescent colours. Pyocyanin, exclusively produced by <em>Pseudomonas </em>bacteria, <a href="https://sarahs-world.blog/bacterial-respiration-gains-energy/">shuttles electrons &#8211; and thus energy &#8211; during the respiration process</a>. Hence, <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7916356/" target="_blank" rel="noreferrer noopener">pyocyanin is essential for <em>Pseudomonas</em> as it keeps the bacteria healthy and alive</a>.</p>



<h2 class="wp-block-heading">Some biopigments have anti-oxidant effects</h2>



<p class="wp-block-paragraph">Bacterial pigments don&#8217;t just help adapt to external environmental conditions like the sunlight. They also <a href="https://sarahs-world.blog/salmonella-stress/" target="_blank" rel="noreferrer noopener">guard the inner bacterial cell from stressful situations</a>.</p>



<p class="wp-block-paragraph">Excess or uncaptured energy or escaped light photons can react with oxygen. This process produces so-called oxygen radicals, which can damage molecules inside the bacterium. Known as <a href="https://sarahs-world.blog/tag/bacterial-stress-response/">oxidative stress</a>, oxygen radicals can even become life-threatening for bacteria.</p>



<p class="wp-block-paragraph">Carotenoids and xanthomonadins protect bacterial cells from oxidative stress. These pigments transform the free oxygen radicals into harmless molecules. Since carotenoids and their product vitamin A have similar functions in humans, it is only healthy for us to take up a lot of these with our diet.</p>



<p class="wp-block-paragraph">In the bacterium <em>Gemmatimonas aurantiaca,</em> orange carotenoids also work like sunscreen and oxidative shield. These pigments both give the bacterium its bright orange colour and protect it from too much sunlight.</p>



<figure class="wp-block-image aligncenter size-large is-resized"><img decoding="async" width="791" height="1024" src="https://sarahs-world.blog/wp-content/uploads/G_gemmatimonas_aurantiaca-791x1024.png" alt="" class="wp-image-5037" style="width:419px;height:auto" srcset="https://sarahs-world.blog/wp-content/uploads/G_gemmatimonas_aurantiaca-791x1024.png 791w, https://sarahs-world.blog/wp-content/uploads/G_gemmatimonas_aurantiaca-232x300.png 232w, https://sarahs-world.blog/wp-content/uploads/G_gemmatimonas_aurantiaca-768x994.png 768w, https://sarahs-world.blog/wp-content/uploads/G_gemmatimonas_aurantiaca-1187x1536.png 1187w, https://sarahs-world.blog/wp-content/uploads/G_gemmatimonas_aurantiaca-1583x2048.png 1583w" sizes="(max-width: 791px) 100vw, 791px" /></figure>



<h2 class="wp-block-heading">Bacteria combat microbial enemies with coloured pigments</h2>



<p class="wp-block-paragraph">As night falls, many bacterial pigments reveal their darker sides. They become important weapons for microbial warfare. Without sunlight, several pigments take on roles as virulence factors and antimicrobials as they mess up cells&#8217; energy and oxygen household.</p>



<p class="wp-block-paragraph">For example, prodigiosin is the red weapon of <em>Serratia marcescens.</em> As prodigiosin inhibits the growth of several bacterial, fungal and insecticidal pathogens, <em>Serratia marcescens</em> is an <a href="https://sarahs-world.blog/bacterial-killer-weapon-as-biocontrol-agent/" target="_blank" rel="noreferrer noopener">important biocontrol bacterium of plant disease</a>.</p>



<p class="wp-block-paragraph">You may have seen prodigiosin-producing <em>Serratia</em> bacteria on contaminated food. They develop these red, blood-like dots.</p>



<p class="wp-block-paragraph">Violacein is a purple pigment with anti-viral, anti-bacterial and anti-cancer properties. For example, <a href="https://sarahs-world.blog/bacteria-firing-toxic-bubbles/" target="_blank" rel="noreferrer noopener"><em>Chromobacterium violaceum</em> sends membrane bubbles filled with violacein to kill bacterial enemies</a>.</p>



<p class="wp-block-paragraph">Similarly, <em>Janthinobacterium lividum</em> protects frogs and salamanders as it lives on their skins. Here, the <a href="https://sarahs-world.blog/bacteria-colourful-antibiotics/" target="_blank" rel="noreferrer noopener">bacterium throws violacein at pathogenic fungi that would otherwise infect and harm the animals</a>.</p>



<figure class="wp-block-image aligncenter size-large is-resized"><img decoding="async" width="921" height="1024" src="https://sarahs-world.blog/wp-content/uploads/J_Janthinobacter_lividum2-1-921x1024.jpg" alt="" class="wp-image-3810" style="width:545px;height:auto" srcset="https://sarahs-world.blog/wp-content/uploads/J_Janthinobacter_lividum2-1-921x1024.jpg 921w, https://sarahs-world.blog/wp-content/uploads/J_Janthinobacter_lividum2-1-270x300.jpg 270w, https://sarahs-world.blog/wp-content/uploads/J_Janthinobacter_lividum2-1-768x854.jpg 768w, https://sarahs-world.blog/wp-content/uploads/J_Janthinobacter_lividum2-1.jpg 924w" sizes="(max-width: 921px) 100vw, 921px" /></figure>



<p class="wp-block-paragraph">Pyocyanin, the fluorescent electron-shuttling pigment in <em>Pseudomonas</em>, is also very sensitive to oxygen. It even turns <em>Pseudomonas aeruginosa</em> cultures in the lab blueish just by shaking and airing them.</p>



<p class="wp-block-paragraph">Yet, not all bacteria have an <a href="https://sarahs-world.blog/antimicrobial-resistance-mechanisms/" target="_blank" rel="noreferrer noopener">appropriate coping mechanism</a> for pyocyanin. Hence, these bacteria suffer oxidative stress when they come into contact with this pigment. This is why <em>Pseudomonas</em> <a href="https://sarahs-world.blog/antibiotics-produced-by-bacteria/">uses pyocyanin also to fight bacterial and fungal enemies</a>.</p>



<h2 class="wp-block-heading">Vivid pigments colour the bacterial world </h2>



<p class="wp-block-paragraph">The <a href="https://sarahs-world.blog/coloured-bacteria-from-a-to-z/" target="_blank" rel="noreferrer noopener">Bacterial World is colourful</a> &#8211; one of this blog’s taglines. You may have asked yourself what this is about and why bacteria have so many different colours.</p>



<p class="wp-block-paragraph">From the dazzling pink of halophilic microorganisms to the sunny yellow of phytopathogens, bacterial pigments give their producers shiny and vibrant colours. But thanks to the colourful biopigments, bacteria also gain abilities to survive in new and challenging environments.</p>



<p class="wp-block-paragraph">Some of these bacterial pigments are essential for us humans and even life on Earth. From some of these colourful biopigments, we <a href="https://doi.org/10.3390%2Fnu15081923">produce vitamins that we need for our own metabolism</a>. Also, every oxygen molecule that you just took up with your last breath, at some point, was transformed by a bacterial chlorophyll pigment.</p>



<p class="wp-block-paragraph">So, I guess it is yet again time to be grateful to bacteria and their vibrant and life-enabling activities!</p>
<p>The post <a href="https://sarahs-world.blog/bacteria-and-the-colourful-world-of-pigments/">Creating the colours of the rainbow: Bacteria and the vibrant world of pigments</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
]]></content:encoded>
					
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			</item>
		<item>
		<title>How bacteria gain energy from cellular respiration to fuel life</title>
		<link>https://sarahs-world.blog/bacterial-respiration-gains-energy/</link>
					<comments>https://sarahs-world.blog/bacterial-respiration-gains-energy/#respond</comments>
		
		<dc:creator><![CDATA[Sarah]]></dc:creator>
		<pubDate>Sun, 30 Jan 2022 11:05:01 +0000</pubDate>
				<category><![CDATA[Bacterial growth]]></category>
		<category><![CDATA[Bacterial membrane]]></category>
		<category><![CDATA[Bacterial movement]]></category>
		<category><![CDATA[Bacterial stress response]]></category>
		<category><![CDATA[Microbial fermentation]]></category>
		<category><![CDATA[Physiology]]></category>
		<guid isPermaLink="false">https://sarahs-world.blog/?p=4044</guid>

					<description><![CDATA[<p>To gain energy, all organisms - including bacteria - need to break molecules apart to get their electrons. In bacteria, this process is called bacterial respiration. Here, we will look at where this energy is stored, what bacteria do with both the electrons and energy and how we use bacterial respiration for our own advantages.</p>
<p>The post <a href="https://sarahs-world.blog/bacterial-respiration-gains-energy/">How bacteria gain energy from cellular respiration to fuel life</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
]]></description>
										<content:encoded><![CDATA[
<p class="wp-block-paragraph">All living organisms need energy.</p>



<p class="wp-block-paragraph">Energy to grow, to move, to fight, to produce stuff and also to reproduce.</p>



<p class="wp-block-paragraph">Generally, living organisms get this energy from food. It fuels us, just as it fuels animals, plants and bacteria.</p>



<p class="wp-block-paragraph">But where exactly is this energy in food? How do bacteria and other living organisms access this energy? And what do they do if their favourite food is not around?</p>



<p class="wp-block-paragraph">To answer these questions, let’s look at how molecules store energy.</p>



<h2 class="wp-block-heading" id="how-do-living-organisms-gain-energy">How do living organisms gain energy?</h2>



<p class="wp-block-paragraph">Each chemical bond between atoms contains energy. Hence, a molecule that is made of many atoms and thus many chemical bonds, contains energy. When such a chemical bond opens, it releases energy in the form of electrons.</p>



<p class="wp-block-paragraph">Depending on the kind of chemical bond within the molecule, these electrons can have higher or lower energy levels. Thus, they contain more or less energy.</p>



<p class="wp-block-paragraph">So, to obtain energy from molecules, organisms need to break apart molecules and extract the electrons with high energy. But this is not as easy as it sounds. Chemical bonds are quite tight and it actually requires energy to break them open.</p>



<p class="wp-block-paragraph">Hence, organisms need to have the right sets of proteins that can break open specific chemical bonds in molecules. These kinds of proteins are called enzymes. So, only if an organism has enzymes to break apart glucose, it can use glucose to extract its electrons and obtain energy.</p>



<p class="wp-block-paragraph">Interestingly, most organisms do exactly that. They break apart glucose into smaller products and take the freed electrons. In that case, glucose is the so-called electron donor.</p>



<p class="wp-block-paragraph">Now, these electrons need to go somewhere, since they are full of energy. So, organisms save this energy by transferring these electrons onto other molecules. These molecules have lower energy levels, hence <a href="https://doi.org/10.1016/j.mib.2010.02.002" target="_blank" rel="noreferrer noopener">they like to take up electrons</a>. We call these molecules electron acceptors.</p>



<p class="wp-block-paragraph">But finding the right electron acceptor is not as easy as it sounds.</p>



<h3 class="wp-block-heading" id="the-many-steps-from-an-electron-donor-to-an-electron-acceptor">The many steps from an electron donor to an electron acceptor</h3>



<p class="wp-block-paragraph">Imagine you stand on a high wall and want to get down onto the ground. You could take one big jump to reach the ground. But then you would risk that this high fall would give you so much energy that you might break your knees.</p>



<p class="wp-block-paragraph">So, you could take a set of stairs, that brings you to the ground in multiple steps. Each step only releases a small chunk of energy but they would definitely not hurt you.</p>



<p class="wp-block-paragraph">It is the same with electrons from donors with a lot of energy. Transferring these electrons to a final electron acceptor would free up too much energy at once. This could actually burn a cell. Hence, organisms transfer these electrons onto intermediate electron acceptors.</p>



<p class="wp-block-paragraph">Each of these transfer steps only releases a small chunk of energy that <a href="https://dx.doi.org/10.1128%2FJB.00797-19" target="_blank" rel="noreferrer noopener">keep organisms warm but also fuel cellular processes</a>. In bacteria, these transfer processes happen in their <a href="https://sarahs-world.blog/tag/bacterial-membrane/">membranes</a>, where the released energy is directly used. </p>



<p class="wp-block-paragraph">Here, the released electrons energise <a href="https://sarahs-world.blog/tag/bacterial-movement/">flagella</a> so that bacteria can swim. Electrons can also activate transporters so that bacteria can import or export stuff. Not needed electrons and their energies are stored in energy-saving molecules like ATP. </p>



<p class="wp-block-paragraph">This whole process of electron transfer from a donor to its final acceptor is generally what researchers call cellular or &#8211; more specifically &#8211; bacterial respiration.</p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" width="791" height="1024" src="https://sarahs-world.blog/wp-content/uploads/E_Escherichia-coli_Adults-791x1024.jpg" alt="Bacteria gain energy with cellular respiration. In their membranes, bacteria use electrons to fuel flagella activity or produce molecules to harvest their energy." class="wp-image-4046" style="width:530px;height:688px" srcset="https://sarahs-world.blog/wp-content/uploads/E_Escherichia-coli_Adults-791x1024.jpg 791w, https://sarahs-world.blog/wp-content/uploads/E_Escherichia-coli_Adults-232x300.jpg 232w, https://sarahs-world.blog/wp-content/uploads/E_Escherichia-coli_Adults-768x994.jpg 768w, https://sarahs-world.blog/wp-content/uploads/E_Escherichia-coli_Adults.jpg 1100w" sizes="(max-width: 791px) 100vw, 791px" /><figcaption class="wp-element-caption">Electrons fuel bacterial respiration. By <a href="https://sarahs-world.blog/tag/sciart/" target="_blank" rel="noreferrer noopener">Noémie Matthey</a>.</figcaption></figure>



<h2 class="wp-block-heading" id="which-molecules-do-bacteria-use-for-cellular-respiration">Which molecules do bacteria use for cellular respiration?</h2>



<p class="wp-block-paragraph">Cellular respiration fuels most living organisms. And glucose is a molecule with one of the highest energy levels. Hence, breaking down glucose to extract its electrons is the most common in living organisms.</p>



<p class="wp-block-paragraph">Animals do it. Fungi do it. So, bacteria are no exception to it.</p>



<p class="wp-block-paragraph">And as a final electron acceptor, most organisms use oxygen. This molecule has a very low energy level and is basically everywhere so most organisms transfer their electrons to it.</p>



<p class="wp-block-paragraph">This is what we call aerobic respiration (which is what we generally do as well). But it comes with great risk.</p>



<h3 class="wp-block-heading" id="the-downside-of-aerobic-bacterial-respiration">The downside of aerobic bacterial respiration</h3>



<p class="wp-block-paragraph">As soon as an oxygen molecule is fuelled with just one electron, it becomes hyperreactive. Such a semi-activated oxygen molecule can basically react with any compound in a cell and damage it.</p>



<p class="wp-block-paragraph">This is what makes aerobic respiration quite dangerous. So, every organism aims to hide these reactive oxygen molecules in the membrane.</p>



<p class="wp-block-paragraph">Yet, it can happen that such a reactive oxygen molecule escapes the membrane. In this case, a <a href="https://dx.doi.org/10.3390%2Fantiox10060839" target="_blank" rel="noreferrer noopener">special protein binds it and breaks it apart</a>. So, every organism that does aerobic respiration has this same kind of protective protein to get rid of reactive oxygen molecules.</p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" width="791" height="1024" src="https://sarahs-world.blog/wp-content/uploads/Q_quadrisphaera_granulorum_Adults-791x1024.jpg" alt="During aerobic respiration, bacteria have to protect themselves from reactive oxygen molecules. For this, they have protective proteins that catch these molecule and break them apart. " class="wp-image-4047" style="width:530px;height:678px" srcset="https://sarahs-world.blog/wp-content/uploads/Q_quadrisphaera_granulorum_Adults-791x1024.jpg 791w, https://sarahs-world.blog/wp-content/uploads/Q_quadrisphaera_granulorum_Adults-232x300.jpg 232w, https://sarahs-world.blog/wp-content/uploads/Q_quadrisphaera_granulorum_Adults-768x994.jpg 768w, https://sarahs-world.blog/wp-content/uploads/Q_quadrisphaera_granulorum_Adults.jpg 900w" sizes="(max-width: 791px) 100vw, 791px" /><figcaption class="wp-element-caption">Protection against reactive oxygen molecules. By <a href="https://sarahs-world.blog/tag/sciart/" target="_blank" rel="noreferrer noopener">Noémie Matthey</a>.</figcaption></figure>



<p class="wp-block-paragraph">This means that whenever scientists find a new microbe, they first test whether this new microbe has these proteins. To test this, they add a bit of hydrogen peroxide to the bacterial colony. When bubbles come out of the bacteria, it means that they do aerobic respiration. In this case, they have the enzymes to break apart the reactive oxygen molecule and produce oxygen from it.</p>



<h2 class="wp-block-heading" id="which-other-molecules-can-bacteria-use-as-energy-source">Which other molecules can bacteria use as energy source?</h2>



<p class="wp-block-paragraph">As we said, most bacteria use glucose as an energy source for cellular respiration. However, there are also many fancy exceptions. And these exceptions make the bacterial &#8211; and microbial &#8211; world so colourful and diverse.</p>



<p class="wp-block-paragraph">While many bacteria can extract electrons from many different organic acids and amino acids, some use sulphur compounds. Some bacteria also <a href="https://doi.org/10.1016/j.tim.2021.08.004" target="_blank" rel="noreferrer noopener">break apart greenhouse gases like methane, carbon monoxide or even hydrogen gas</a>. Since these <a href="https://sarahs-world.blog/category/bacteria-save-planet/">bacteria might be helpful in tackling our climate problems</a>, they are of particular interest to researchers!</p>



<h3 class="wp-block-heading" id="what-does-bacterial-respiration-look-like-without-oxygen">What does bacterial respiration look like without oxygen?</h3>



<p class="wp-block-paragraph">We surely need our oxygen for respiration. Yet, many bacteria and <a href="https://sarahs-world.blog/tag/fungi/">fungi </a>can live with only small amounts of it or even no oxygen at all.</p>



<p class="wp-block-paragraph">In this case, they do anaerobic respiration. This basically means that <a href="https://sarahs-world.blog/microbial-fermentation-impacts-food-industry-health/" target="_blank" rel="noreferrer noopener">they don&#8217;t transfer their electrons to oxygen as an electron acceptor</a>.</p>



<p class="wp-block-paragraph">Instead, many bacteria have enzymes to transfer their electrons to different electron acceptors. And these depend on <a href="https://dx.doi.org/10.3389%2Ffmolb.2021.667758" target="_blank" rel="noreferrer noopener">what the bacteria have available around them</a>. These electron acceptors can be nitrate or sulphate compounds, salts like arsenate or even metals like iron and gold.</p>



<p class="wp-block-paragraph">Also, in many microbes, anaerobic respiration is closely related to <a href="https://sarahs-world.blog/tag/microbial-fermentation/">microbial fermentation</a>. In this case, the bacteria break apart glucose but <a href="https://dx.doi.org/10.1111%2Fmmi.14795" target="_blank" rel="noreferrer noopener">produce molecules that do not require oxygen</a>.</p>



<p class="wp-block-paragraph">Just think about <a href="https://sarahs-world.blog/microbes-make-foods/">yeast that produces ethanol in beer and wine</a>. Or <a href="https://sarahs-world.blog/whats-in-your-yogurt/">lactic acid bacteria in your sauerkraut and </a>yoghurt that produce lactic acid to make the food more acidic. Lastly, there are fungi like <a href="https://sarahs-world.blog/bacteria-produce-bioethanol/"><em>Zymomonas mobilis</em> that produce huge amounts of ethanol from glucose</a>.</p>



<figure class="wp-block-image aligncenter size-large is-resized"><a href="https://sarahs-world.blog/bacteria-produce-bioethanol/"><img loading="lazy" decoding="async" width="1024" height="791" src="https://sarahs-world.blog/wp-content/uploads/Z_zymomonas-mobilis_Adults_colored_blog_Low-1-1024x791.jpg" alt="Bacteria like Zymomonas mobilis produce bioethanol through microbial fermentation." class="wp-image-3796" style="width:750px;height:578px" srcset="https://sarahs-world.blog/wp-content/uploads/Z_zymomonas-mobilis_Adults_colored_blog_Low-1-1024x791.jpg 1024w, https://sarahs-world.blog/wp-content/uploads/Z_zymomonas-mobilis_Adults_colored_blog_Low-1-300x232.jpg 300w, https://sarahs-world.blog/wp-content/uploads/Z_zymomonas-mobilis_Adults_colored_blog_Low-1-768x594.jpg 768w, https://sarahs-world.blog/wp-content/uploads/Z_zymomonas-mobilis_Adults_colored_blog_Low-1-1536x1187.jpg 1536w, https://sarahs-world.blog/wp-content/uploads/Z_zymomonas-mobilis_Adults_colored_blog_Low-1.jpg 1196w" sizes="(max-width: 1024px) 100vw, 1024px" /></a><figcaption class="wp-element-caption">Bacterial respiration can produce bioethanol. By <a href="https://sarahs-world.blog/tag/sciart/" target="_blank" rel="noreferrer noopener">Noémie Matthey</a>.</figcaption></figure>



<h2 class="wp-block-heading" id="bacterial-respiration-makes-the-microbial-world-diverse">Bacterial respiration makes the microbial world diverse</h2>



<p class="wp-block-paragraph">As we have seen, bacteria learned to use various sources to gain energy. They created the right enzymes to extract electrons from fancy high-energy molecules.</p>



<p class="wp-block-paragraph">And then they learned to transfer these electrons onto even fancier molecules to gain the most energy. Some of these processes even involve <a href="https://sarahs-world.blog/bacterial-superpowers/#gold">bacteria producing shiny gold</a>!</p>



<p class="wp-block-paragraph">In my opinion, these <a href="https://sarahs-world.blog/category/bacterial-superpowers/">truly amazing superpowers</a> make the bacterial world so incredibly colourful and fascinating!</p>
<p>The post <a href="https://sarahs-world.blog/bacterial-respiration-gains-energy/">How bacteria gain energy from cellular respiration to fuel life</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
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		<title>Why bacteria divide into two and grow with the help of a strong ring</title>
		<link>https://sarahs-world.blog/how-bacteria-divide-and-grow/</link>
					<comments>https://sarahs-world.blog/how-bacteria-divide-and-grow/#comments</comments>
		
		<dc:creator><![CDATA[Sarah]]></dc:creator>
		<pubDate>Sun, 22 Aug 2021 09:14:00 +0000</pubDate>
				<category><![CDATA[Bacterial growth]]></category>
		<category><![CDATA[Antibiotics]]></category>
		<category><![CDATA[Antimicrobial resistance]]></category>
		<category><![CDATA[Bacterial membrane]]></category>
		<category><![CDATA[Bacterial stress response]]></category>
		<category><![CDATA[Sporulation]]></category>
		<category><![CDATA[Toxins]]></category>
		<guid isPermaLink="false">https://sarahs-world.blog/?p=3638</guid>

					<description><![CDATA[<p>Bacteria divide by measuring their middle and forming a ring. They then extend their cells while the ring tightens. Like this, two daughter cells grow out of one mother cell. However, the daughter cells do not always look the same...</p>
<p>The post <a href="https://sarahs-world.blog/how-bacteria-divide-and-grow/">Why bacteria divide into two and grow with the help of a strong ring</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
]]></description>
										<content:encoded><![CDATA[
<p class="wp-block-paragraph">Every living organism aims to grow and make more of itself. This is every species&#8217; evolutionary drive and primary instinct.</p>



<p class="wp-block-paragraph">Also, bacteria want to grow and flourish and reproduce. But they are only single cells so that their way of reproduction is unique. They reproduce asexually meaning you only need one parent bacterium to make two daughter bacteria.</p>



<p class="wp-block-paragraph">When you think about it, bacterial cell division seems very easy: Start with one bacterium, divide it in the middle and you end up with two.</p>



<p class="wp-block-paragraph">However, the mechanism of cell division is <a href="https://dx.doi.org/10.1242%2Fjcs.237057" target="_blank" rel="noreferrer noopener">pretty complex and involves at least three tasks</a>:</p>



<ul class="wp-block-list">
<li>the bacterium needs to decide WHERE to divide</li>



<li>get all the needed machinery to the division site</li>



<li>produce new cell envelope material to separate the two new daughter cells</li>
</ul>



<h2 class="wp-block-heading">How a bacterium starts cell division</h2>



<p class="wp-block-paragraph">As you can imagine, for most bacteria it makes the most sense to divide straight in the middle. Like this, they end up with two daughter cells of the same size.</p>



<p class="wp-block-paragraph">This means a bacterium needs to find its middle and mark it. While it is not completely clear yet to researchers how bacteria find the exact middle, they know it involves a so-called Z-protein.</p>



<p class="wp-block-paragraph">This Z-protein can bind two things: itself and the inside of the bacterial cell envelope. But it only binds the cell envelope where it is straight and not bent. And this is only the case in the middle of the bacterial cell envelope.</p>



<p class="wp-block-paragraph">Hence, the Z-proteins bind themselves in a long chain linked to the straight cell envelope. Eventually, they form a ring on the inside of a bacterial cell. And this so-called Z-ring stays in the middle of the bacterium.</p>



<p class="wp-block-paragraph">Also, the Z-ring is only stable when bacteria h<a href="https://dx.doi.org/10.3389%2Ffmicb.2021.697930" target="_blank" rel="noreferrer noopener">ave enough nutrients and do not encounter any stress situations</a>. This reassures that bacteria only divide when they have all the needed supplies.</p>



<h2 class="wp-block-heading">How bacteria divide and produce two daughter cells</h2>



<p class="wp-block-paragraph">Once this Z-ring is stable, it recruits helper machineries to this now defined division site.</p>



<p class="wp-block-paragraph">The Z-ring is a sign of an upcoming cell division. Now, the bacterium knows it needs to activate machineries to produce more cell envelope material and become longer. And to increase their cell envelopes, <a href="https://sarahs-world.blog/bacteria-grow-membranes/" target="_blank" rel="noreferrer noopener">bacteria use ferries, tunnels and bridges to transport lipids into the cell envelope</a>.</p>



<p class="wp-block-paragraph">Like this, the bacterium becomes longer and can start the actual cell division. At the same time, the Z-ring becomes tighter and the cell envelope gets its natural bend again.</p>



<figure class="wp-block-image aligncenter size-full is-resized"><img loading="lazy" decoding="async" width="700" height="543" src="https://sarahs-world.blog/wp-content/uploads/Prokaryotic-Cell-Division-by-Binary-Fission.jpg" alt="The mechanism of bacterial cell division. Bacteria divide by forming a ring, extending their cells and tightening that ring so that two identical daughter cells grow." class="wp-image-3639" style="width:654px;height:507px" srcset="https://sarahs-world.blog/wp-content/uploads/Prokaryotic-Cell-Division-by-Binary-Fission.jpg 700w, https://sarahs-world.blog/wp-content/uploads/Prokaryotic-Cell-Division-by-Binary-Fission-300x233.jpg 300w" sizes="(max-width: 700px) 100vw, 700px" /><figcaption class="wp-element-caption">Bacterial cell division. Created with <a href="https://biorender.com" target="_blank" rel="noreferrer noopener">BioRender</a>.</figcaption></figure>



<p class="wp-block-paragraph">Now, two processes happen at the same time: Bacteria cut open their peptidoglycan envelope to separate the two daughter cells and also produce envelope material to close both cells.</p>



<p class="wp-block-paragraph">After this happened, we have two daughter cells coming from the same parent. They both share the same cell envelope and genome. This is why we consider them identical twins.</p>



<p class="wp-block-paragraph">But do all bacteria produce identical twins upon cell division?</p>



<h2 class="wp-block-heading">Do bacteria always divide in the middle and produce identical daughter cells?</h2>



<p class="wp-block-paragraph">Yes, most bacteria are symmetrical. And when they divide right in the middle, they produce two identical daughter cells.</p>



<p class="wp-block-paragraph">Researchers could even watch bacteria during this process thanks to amazing microscopy techniques. You can see the single stages of bacterial cell division and how bacteria produce the cell envelope in the image below.</p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" width="1024" height="1019" src="https://sarahs-world.blog/wp-content/uploads/Staphylococcus-aureus-cell-division-1-1024x1019.jpg" alt="Electron microscopy images of different stages of cell division of Staphylococcus aureus." class="wp-image-3641" style="width:470px;height:467px" srcset="https://sarahs-world.blog/wp-content/uploads/Staphylococcus-aureus-cell-division-1-1024x1019.jpg 1024w, https://sarahs-world.blog/wp-content/uploads/Staphylococcus-aureus-cell-division-1-300x298.jpg 300w, https://sarahs-world.blog/wp-content/uploads/Staphylococcus-aureus-cell-division-1-150x150.jpg 150w, https://sarahs-world.blog/wp-content/uploads/Staphylococcus-aureus-cell-division-1-768x764.jpg 768w, https://sarahs-world.blog/wp-content/uploads/Staphylococcus-aureus-cell-division-1.jpg 929w" sizes="(max-width: 1024px) 100vw, 1024px" /><figcaption class="wp-element-caption"> <em>Staphylococcus aureus</em> cell division from<a href="https://doi.org/10.1038/s41564-019-0632-1" target="_blank" rel="noreferrer noopener"> Do <em>et al.</em> (2020).</a></figcaption></figure>



<p class="wp-block-paragraph">Yet, the bacterium <a href="https://sarahs-world.blog/bacterial-glue/" target="_blank" rel="noreferrer noopener"><em>Caulobacter crescentus</em> has two different cell ends</a>. It can stick to a surface with its sticky stalk on one end and have flagella on the other.</p>



<p class="wp-block-paragraph">This bacterium also starts cell division in the middle like what we discussed above. However, the new daughter cells are now different: one is still glued to the surface and the other one has flagella and can swim away.</p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" width="1024" height="470" src="https://sarahs-world.blog/wp-content/uploads/Caulobacter-cycle-1-1024x470.jpg" alt="Caulobacter crescentus bacterial cell division cycle. The bacterium attaches to a surface with its stalk, grows and divides into two daughter cells that look differently." class="wp-image-3773" style="width:731px;height:335px" srcset="https://sarahs-world.blog/wp-content/uploads/Caulobacter-cycle-1-1024x470.jpg 1024w, https://sarahs-world.blog/wp-content/uploads/Caulobacter-cycle-1-300x138.jpg 300w, https://sarahs-world.blog/wp-content/uploads/Caulobacter-cycle-1-768x352.jpg 768w, https://sarahs-world.blog/wp-content/uploads/Caulobacter-cycle-1-1536x704.jpg 1536w, https://sarahs-world.blog/wp-content/uploads/Caulobacter-cycle-1.jpg 1594w" sizes="(max-width: 1024px) 100vw, 1024px" /><figcaption class="wp-element-caption"> The <a href="https://sarahs-world.blog/bacterial-glue/" target="_blank" rel="noreferrer noopener">cell divisio</a>n cycle of <em>Caulobacter crescentus</em>. </figcaption></figure>



<p class="wp-block-paragraph">Also, the bacterium <em>Helicobacter pylori</em> with its helical shape can never really find its perfect middle. Hence, the Z-ring forms somewhere inside the bacterium and its daughter cells always have different sizes.</p>



<p class="wp-block-paragraph">And then there are funny bacteria that decided they don&#8217;t even need to divide in the middle. Bacteria like <em>Gemmatimonas aurantiaca</em> grow &#8220;budding&#8221; daughter cells out of their own parent cells. However, researchers don&#8217;t understand yet why this bacterium chooses to divide in this asymmetric way.</p>



<figure class="wp-block-image aligncenter size-large"><img loading="lazy" decoding="async" width="1024" height="332" src="https://sarahs-world.blog/wp-content/uploads/Gemmatomonas-cell-division-1024x332.jpg" alt="Gemmatimonas aurantiaca divides by growing budding daughter cells." class="wp-image-3643" srcset="https://sarahs-world.blog/wp-content/uploads/Gemmatomonas-cell-division-1024x332.jpg 1024w, https://sarahs-world.blog/wp-content/uploads/Gemmatomonas-cell-division-300x97.jpg 300w, https://sarahs-world.blog/wp-content/uploads/Gemmatomonas-cell-division-768x249.jpg 768w, https://sarahs-world.blog/wp-content/uploads/Gemmatomonas-cell-division.jpg 1381w" sizes="(max-width: 1024px) 100vw, 1024px" /><figcaption class="wp-element-caption"> <em>Gemmatimonas aurantiaca</em> cell division from <a href="https://doi.org/10.1099/ijs.0.02520-0" target="_blank" rel="noreferrer noopener">Zhang et al (2003)</a> and <a href="https://doi.org/10.1099/ijs.0.000272" target="_blank" rel="noreferrer noopener">Zeng et al (2015)</a><a href="https://doi.org/10.1099/ijs.0.000272">.</a></figcaption></figure>



<p class="wp-block-paragraph">Another way of asymmetric cell division happens in the bacterium <a href="https://sarahs-world.blog/bacterial-sporulation/" target="_blank" rel="noreferrer noopener"><em>Bacillus subtilis</em> when it produces spores</a>. During the sporulation process, the spore daughter cell grows within the mother cell. In the end, the mother cell bursts to release the spore into the environment. In this case, only one daughter cell comes out of the division process.</p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" width="791" height="1024" src="https://sarahs-world.blog/wp-content/uploads/G_gemmatimonas_aurantiaca_adults-low-791x1024.jpg" alt="When bacteria divide, they do not always produce identical daughter cells. Asymmetrical bacterial cell division results in daughter cells of different sizes or forms." class="wp-image-3644" style="width:474px;height:613px" srcset="https://sarahs-world.blog/wp-content/uploads/G_gemmatimonas_aurantiaca_adults-low-791x1024.jpg 791w, https://sarahs-world.blog/wp-content/uploads/G_gemmatimonas_aurantiaca_adults-low-232x300.jpg 232w, https://sarahs-world.blog/wp-content/uploads/G_gemmatimonas_aurantiaca_adults-low-768x994.jpg 768w, https://sarahs-world.blog/wp-content/uploads/G_gemmatimonas_aurantiaca_adults-low.jpg 924w" sizes="(max-width: 791px) 100vw, 791px" /><figcaption class="wp-element-caption">Different mechanisms of bacterial cell division. By <a href="https://sarahs-world.blog/tag/sciart" target="_blank" rel="noreferrer noopener">Noémie Matthey</a>.</figcaption></figure>



<h2 class="wp-block-heading">Why and how we want to prevent bacteria from dividing</h2>



<p class="wp-block-paragraph">Since cell division is an essential mechanism for bacteria, nature also found ways to inhibit it. Many <a href="https://sarahs-world.blog/tag/antibiotics/" target="_blank" rel="noreferrer noopener">antibiotics </a>or <a href="https://sarahs-world.blog/tag/toxins/" target="_blank" rel="noreferrer noopener">toxins </a>inhibit the production of cell envelope material or of the Z-ring. Like this, bacteria cannot divide anymore; they cannot grow and die.</p>



<p class="wp-block-paragraph">However, we also know that some bacteria can find ways around the toxicities of antibiotics or toxins and become resistant to them. Hence, by better understanding how the whole mechanism works, researchers can hopefully find new ways to interfere with bacterial growth and find new weapons in the fight against <a href="https://sarahs-world.blog/tag/antimicrobial-resistance/" target="_blank" rel="noreferrer noopener">antimicrobial resistance</a>.</p>
<p>The post <a href="https://sarahs-world.blog/how-bacteria-divide-and-grow/">Why bacteria divide into two and grow with the help of a strong ring</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
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		<title>How bacteria fight off viruses</title>
		<link>https://sarahs-world.blog/bacteria-fight-viruses/</link>
					<comments>https://sarahs-world.blog/bacteria-fight-viruses/#comments</comments>
		
		<dc:creator><![CDATA[Sarah]]></dc:creator>
		<pubDate>Sun, 14 Feb 2021 14:03:00 +0000</pubDate>
				<category><![CDATA[The microbial world]]></category>
		<category><![CDATA[Bacterial membrane]]></category>
		<category><![CDATA[Bacterial stress response]]></category>
		<category><![CDATA[Biofilms]]></category>
		<category><![CDATA[Microbial communities]]></category>
		<category><![CDATA[Virus]]></category>
		<guid isPermaLink="false">https://sarahs-world.blog/?p=3059</guid>

					<description><![CDATA[<p>Bacteria are constantly attacked by other microbes like viruses. But also bacteria developed mechanisms that make them immune to viral intruders. Read on to find out how bacteria fight off viruses to protect themselves and the whole bacterial community.</p>
<p>The post <a href="https://sarahs-world.blog/bacteria-fight-viruses/">How bacteria fight off viruses</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
]]></description>
										<content:encoded><![CDATA[
<p class="wp-block-paragraph">Bacteria are constantly at war. Either they are <a href="https://sarahs-world.blog/category/bacterial-wars/" target="_blank" rel="noreferrer noopener">attacked by other bacteria</a>, or by other microbes like <a href="https://sarahs-world.blog/tag/virus/">viruses</a>.</p>



<p class="wp-block-paragraph">For a <a href="https://sarahs-world.blog/difference-between-bacteria-viruses/">virus to survive, it needs another living organism</a>. Viruses infect any organism that has its own metabolism: animals, humans, fungi or even bacteria.</p>



<p class="wp-block-paragraph">But none of these organisms likes being infected by a virus. It makes them sick.</p>



<p class="wp-block-paragraph">Therefore, each organism developed its own way to fight off viruses. For example, you have your immune system that is trying to protect you from bad viruses.</p>



<p class="wp-block-paragraph">And so do bacteria.</p>



<p class="wp-block-paragraph">The bacterial immune system is not as complex and sophisticated as ours. But still, bacteria developed several mechanisms to fight off viruses and protect the community.</p>



<p class="wp-block-paragraph">Here, we will look at the different ways of how bacteria become immune to viruses.</p>



<h2 class="wp-block-heading">How a virus infects a bacterium</h2>



<p class="wp-block-paragraph">First, let&#8217;s have a look at <a href="https://sarahs-world.blog/difference-between-bacteria-viruses/">how a virus infects a bacterium and reproduces</a>.</p>



<p class="wp-block-paragraph">Most viruses can only infect one specific bacterium. This is because each bacterium has a slightly different coat around its cell. And viruses recognise specific components on the outside of these coats.</p>



<p class="wp-block-paragraph">When a virus binds to such a specific component on the bacterium, it cuts a little hole into the coat. Now, the virus can inject its genome through the hole into the bacterium.</p>



<div class="wp-block-image"><figure class="aligncenter size-large is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/viral-infection-of-a-bacterium-1-1024x994.jpg" alt="Viruses recognise bacteria by their coats and cut holes into them before injecting their genome into them." class="wp-image-3753" width="476" height="462" srcset="https://sarahs-world.blog/wp-content/uploads/viral-infection-of-a-bacterium-1-1024x994.jpg 1024w, https://sarahs-world.blog/wp-content/uploads/viral-infection-of-a-bacterium-1-300x291.jpg 300w, https://sarahs-world.blog/wp-content/uploads/viral-infection-of-a-bacterium-1-768x745.jpg 768w, https://sarahs-world.blog/wp-content/uploads/viral-infection-of-a-bacterium-1.jpg 952w" sizes="(max-width: 476px) 100vw, 476px" /><figcaption>Viruses recognise bacteria and inject their genome. <a href="https://sarahs-world.blog/tag/sciart/">By Noémie Matthey.</a></figcaption></figure></div>



<p class="wp-block-paragraph">The bacterium recognises the genome and starts producing virus particles from the viral genome.</p>



<p class="wp-block-paragraph">After the bacterium produced many virus particles and they assembled into full viruses, the bacterium bursts and dies. This releases the produced viruses from the bacterium. The viruses now spread and infect other bacteria and the cycle begins again.</p>



<h2 class="wp-block-heading">How bacteria fight off viruses</h2>



<p class="wp-block-paragraph">Each infected bacterium is a risk to the whole bacterial community. An infected bacterium produces many viruses that can infect many more bacteria in a community.</p>



<p class="wp-block-paragraph">This is why, bacteria developed several ways to defend themselves against viruses. And many bacteria use different modes of defence against viral attacks.</p>



<p class="wp-block-paragraph">So, what does a bacterium do to defend itself against viruses?</p>



<h3 class="wp-block-heading">Preventing the virus from binding</h3>



<p class="wp-block-paragraph">The first line of defence against a viral intruder is to prevent a virus from binding to the coat of the bacterium.</p>



<p class="wp-block-paragraph">A virus recognises and binds to a specific component on the coat of the bacterium. So, a bacterium can mutate this component and change it to prevent the virus from binding.</p>



<div class="wp-block-image"><figure class="aligncenter size-large is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/1-RBP-modification-low-pixels-2-1024x1024.jpg" alt="To become resistant to viruses, bacteria change the outer surface of their coats." class="wp-image-3754" width="512" height="512" srcset="https://sarahs-world.blog/wp-content/uploads/1-RBP-modification-low-pixels-2-1024x1024.jpg 1024w, https://sarahs-world.blog/wp-content/uploads/1-RBP-modification-low-pixels-2-300x300.jpg 300w, https://sarahs-world.blog/wp-content/uploads/1-RBP-modification-low-pixels-2-150x150.jpg 150w, https://sarahs-world.blog/wp-content/uploads/1-RBP-modification-low-pixels-2-768x768.jpg 768w, https://sarahs-world.blog/wp-content/uploads/1-RBP-modification-low-pixels-2.jpg 924w" sizes="(max-width: 512px) 100vw, 512px" /><figcaption>Bacteria change the surface of their coats. By <a href="https://sarahs-world.blog/tag/sciart/">Noémie Matthey.</a></figcaption></figure></div>



<p class="wp-block-paragraph"><a href="https://doi.org/10.1146/annurev-virology-031413-085500" target="_blank" rel="noreferrer noopener">Another option is for the bacterium to produce biofilm</a>. Biofilm is a slime that covers the bacterium and all its bacterial friends and <a href="https://sarahs-world.blog/bacteria-building-houses/" target="_blank" rel="noreferrer noopener">protects them from harmful components like antibiotics, chemicals and viruses</a>.</p>



<h3 class="wp-block-heading">Sending out bacterial decoys</h3>



<p class="wp-block-paragraph">A really smart way of bacteria is to mislead viruses. B<a href="https://sarahs-world.blog/bacteria-firing-toxic-bubbles/">acteria can produce bubbles from their coats</a> that still contain the specific components that viruses bind to.</p>



<p class="wp-block-paragraph">A <a href="https://doi.org/10.1186/1471-2180-11-258" target="_blank" rel="noreferrer noopener">virus can bind to these specific components</a> and infect the bubbles. But the bubbles do not contain machines to produce viruses. Therefore, the bacterium does not get infected and will not produce any viruses.</p>



<div class="wp-block-image"><figure class="aligncenter size-large is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/2-OMVs-low-pixels-1-1024x1024.jpg" alt="Bacteria send out empty coated bubbles for viruses to infect them." class="wp-image-3756" width="512" height="512" srcset="https://sarahs-world.blog/wp-content/uploads/2-OMVs-low-pixels-1-1024x1024.jpg 1024w, https://sarahs-world.blog/wp-content/uploads/2-OMVs-low-pixels-1-300x300.jpg 300w, https://sarahs-world.blog/wp-content/uploads/2-OMVs-low-pixels-1-150x150.jpg 150w, https://sarahs-world.blog/wp-content/uploads/2-OMVs-low-pixels-1-768x768.jpg 768w, https://sarahs-world.blog/wp-content/uploads/2-OMVs-low-pixels-1.jpg 924w" sizes="(max-width: 512px) 100vw, 512px" /><figcaption>Bacteria send out empty membrane vesicles. By <a href="https://sarahs-world.blog/tag/sciart/">Noémie Matthey.</a> </figcaption></figure></div>



<p class="wp-block-paragraph">Smart bacteria!</p>



<h3 class="wp-block-heading">Destroying what is coming in</h3>



<p class="wp-block-paragraph">After a virus attached to a bacterium, the actual infection starts when a virus injects its genome into the bacterium. This can be DNA or RNA.</p>



<p class="wp-block-paragraph">Some of our little bacterial friends developed smart devices to recognise any DNA or RNA that does not belong to the bacteria. When a bacterium &#8220;sees&#8221; viral DNA or RNA inside the cell, it activates huge destruction machineries. These work like scissors and cut viral DNA or RNA into tiny pieces to make them non-functional. Now, the bacterium will not even start producing viral components.</p>



<div class="wp-block-image"><figure class="aligncenter size-large is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/3-degrading-entering-DNA-low-pixels-1-1024x1024.jpg" alt="Bacteria destroy the incoming viral genome." class="wp-image-3765" width="512" height="512" srcset="https://sarahs-world.blog/wp-content/uploads/3-degrading-entering-DNA-low-pixels-1-1024x1024.jpg 1024w, https://sarahs-world.blog/wp-content/uploads/3-degrading-entering-DNA-low-pixels-1-300x300.jpg 300w, https://sarahs-world.blog/wp-content/uploads/3-degrading-entering-DNA-low-pixels-1-150x150.jpg 150w, https://sarahs-world.blog/wp-content/uploads/3-degrading-entering-DNA-low-pixels-1-768x768.jpg 768w, https://sarahs-world.blog/wp-content/uploads/3-degrading-entering-DNA-low-pixels-1.jpg 924w" sizes="(max-width: 512px) 100vw, 512px" /><figcaption>Bacteria destroy the incoming viral genome. By <a href="https://sarahs-world.blog/tag/sciart/">Noémie Matthey.</a>  </figcaption></figure></div>



<p class="wp-block-paragraph">Many bacteria have<a href="https://doi.org/10.1128/JB.01412-07" target="_blank" rel="noreferrer noopener"> different kinds of anti-viral scissors</a>. And each one machinery recognises and cuts one specific piece of viral DNA or RNA.</p>



<p class="wp-block-paragraph">The interesting thing is that bacteria use these scissors also to learn to fight new viruses. With the so-called <a href="https://doi.org/10.1016/j.cell.2017.11.032" target="_blank" rel="noreferrer noopener">CRISPR-Cas system, a bacterium learns to recognise new pieces of viral DNA or RNA</a> when it first &#8220;sees&#8221; it. The next time the bacterium is infected with that same virus, it already knows how to fight it.</p>



<p class="wp-block-paragraph">This is similar to how our body learns to fight a virus after we gave it a vaccine. We show our bodies what a certain virus looks like and it can develop the right weapons against it. The next time this virus attacks our body, we already have powerful weapons to fight the intruding virus.</p>



<h3 class="wp-block-heading">Inhibiting the viral genome</h3>



<p class="wp-block-paragraph">If a virus was indeed successful and injected its DNA or RNA into a bacterium, some bacteria can still handle this. In this case, the bacterium produces specific molecules that <a href="https://doi.org/10.1038/s41586-018-0767-x" target="_blank" rel="noreferrer noopener">bind to the viral DNA and prevent it from functioning properly</a>.</p>



<p class="wp-block-paragraph">This prevents the bacterium from producing viral components from the viral genome.</p>



<h3 class="wp-block-heading">If nothing else works there is still one way out</h3>



<p class="wp-block-paragraph">Imagine, a virus was indeed lucky and managed to inject its DNA or RNA into a bacterium. And then imagine, the bacterium did not destroy the viral DNA or RNA and it produced viral components.</p>



<p class="wp-block-paragraph">Now, the bacterium needs to prevent that these particles assemble into full viruses so that it does not kill the bacterium and spread into the surrounding.</p>



<p class="wp-block-paragraph">In this case, bacteria have one last line of defence. And this defence mechanism is a truly altruistic weapon: Kill itself to protect the others.</p>



<p class="wp-block-paragraph">Yes, an infected bacterium is prepared to <a href="https://doi.org/10.1146/annurev-virology-011620-040628" target="_blank" rel="noreferrer noopener">sacrifice itself so that the whole community survives</a>.</p>



<p class="wp-block-paragraph">Just before virus particles assemble to full viruses, a bacterium can activate a suicidal mechanism. Like this, no full viruses will be released into the surrounding. No other bacteria will get infected with this virus. Everyone is safe.</p>



<div class="wp-block-image"><figure class="aligncenter size-large is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/4-suicidal-low-pixels-1-1024x1024.jpg" alt="As a last line of defence, bacteria commit suicide to protect other bacterial players from virus infections." class="wp-image-3759" width="512" height="512" srcset="https://sarahs-world.blog/wp-content/uploads/4-suicidal-low-pixels-1-1024x1024.jpg 1024w, https://sarahs-world.blog/wp-content/uploads/4-suicidal-low-pixels-1-300x300.jpg 300w, https://sarahs-world.blog/wp-content/uploads/4-suicidal-low-pixels-1-150x150.jpg 150w, https://sarahs-world.blog/wp-content/uploads/4-suicidal-low-pixels-1-768x768.jpg 768w, https://sarahs-world.blog/wp-content/uploads/4-suicidal-low-pixels-1.jpg 924w" sizes="(max-width: 512px) 100vw, 512px" /><figcaption>Bacteria commit suicide as a last resort against viruses. By <a href="https://sarahs-world.blog/tag/sciart/">Noémie Matthey.</a> </figcaption></figure></div>



<p class="wp-block-paragraph">Because bacterial suicide is such a drastic mechanism, bacteria only activate it after all other defence mechanisms failed.</p>



<h2 class="wp-block-heading">Multiple lines of defence to protect the whole community</h2>



<p class="wp-block-paragraph">As you can see, bacteria developed several ways to protect themselves from viral attacks.</p>



<div class="wp-block-image"><figure class="aligncenter size-large is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/How-bacteria-fight-off-viruses_Pin-1-683x1024.jpg" alt="How bacteria fight off viruses" class="wp-image-3762" width="512" height="768" srcset="https://sarahs-world.blog/wp-content/uploads/How-bacteria-fight-off-viruses_Pin-1-683x1024.jpg 683w, https://sarahs-world.blog/wp-content/uploads/How-bacteria-fight-off-viruses_Pin-1-200x300.jpg 200w, https://sarahs-world.blog/wp-content/uploads/How-bacteria-fight-off-viruses_Pin-1-768x1152.jpg 768w, https://sarahs-world.blog/wp-content/uploads/How-bacteria-fight-off-viruses_Pin-1.jpg 924w" sizes="(max-width: 512px) 100vw, 512px" /><figcaption>How bacteria fight off viruses. Pin it!</figcaption></figure></div>



<p class="wp-block-paragraph">Don&#8217;t forget that also viruses mutate and can become resistant to any of these mechanisms. So it is a constant microscopic war between all the different microbial players.</p>



<p class="wp-block-paragraph">Interestingly, not one bacterium has all the described mechanisms and is perfectly protected. But each bacterium has a few of these anti-viral weapons. Therefore, by working together, <a href="https://doi.org/10.1038/s41579-019-0278-2" target="_blank" rel="noreferrer noopener">the whole bacterial community knows how to fight off most viruses</a>. This teamwork can indeed protect the whole community.</p>





<p class="wp-block-paragraph">How much we can learn from our microbial friends about how to fight off nasty viruses :) </p>
<p>The post <a href="https://sarahs-world.blog/bacteria-fight-viruses/">How bacteria fight off viruses</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
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		<title>Bacteria wrap themselves in their swimming flagella</title>
		<link>https://sarahs-world.blog/bacteria-wrap-themselves-in-flagella/</link>
					<comments>https://sarahs-world.blog/bacteria-wrap-themselves-in-flagella/#respond</comments>
		
		<dc:creator><![CDATA[Sarah]]></dc:creator>
		<pubDate>Sun, 10 Jan 2021 11:59:00 +0000</pubDate>
				<category><![CDATA[Bacteria as pathogens]]></category>
		<category><![CDATA[Bacterial movement]]></category>
		<category><![CDATA[Bacterial stress response]]></category>
		<category><![CDATA[Human body]]></category>
		<category><![CDATA[Immune system]]></category>
		<guid isPermaLink="false">https://sarahs-world.blog/?p=3021</guid>

					<description><![CDATA[<p>Bacteria swim through liquids with their flagella. Some bacteria even have two flagella at opposite ends that help them to swim through mucus and slime. This movement helps bacteria to infect the human body. Now, researchers start to better understand how these flagella work together to move the bacterium forward.</p>
<p>The post <a href="https://sarahs-world.blog/bacteria-wrap-themselves-in-flagella/">Bacteria wrap themselves in their swimming flagella</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
]]></description>
										<content:encoded><![CDATA[
<p class="wp-block-paragraph">The human body developed amazing mechanisms to fight off bacterial <a href="https://sarahs-world.blog/category/pathogens/" target="_blank" rel="noreferrer noopener">pathogens</a>. And yet, many bacteria learned to swim through our bodies as if nothing was in their ways. As if there was no obstacle, no<a href="https://sarahs-world.blog/tag/immune-system/" target="_blank" rel="noreferrer noopener"> immune system</a> to stop them. </p>



<p class="wp-block-paragraph">Many of our organs have a slimy mucus which is supposed to stop bacteria from entering the human body. But some bacteria developed mechanisms to swim through this gel-like mucus faster than others. </p>



<p class="wp-block-paragraph">And these bacteria are usually the ones that make us super sick.</p>



<h2 class="wp-block-heading">Meet the bacterial race swimmer <em>Campylobacter jejuni</em></h2>



<p class="wp-block-paragraph">The pathogenic bacterium <em>Campylobacter jejuni</em> for example causes food-poisoning and watery diarrhoea. And this pathogen can swim through gel-like slimes, like the mucus in our bodies. Other bacteria are slowed down by this slime, but not <em>Campylobacter jejuni</em>. It even swims faster when it hits slime!</p>



<p class="wp-block-paragraph">Why is that?</p>



<p class="wp-block-paragraph">Well, that is exactly what researchers were trying to find out.</p>



<h2 class="wp-block-heading">Two flagella for one movement</h2>



<p class="wp-block-paragraph"><em>Campylobacter jejuni</em> looks pretty cool. It has a helical shape and one flagellum on each side of the cell. Flagella are like fine hair that grow out of the bacterium.&nbsp;</p>



<div class="wp-block-image"><figure class="aligncenter size-full is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/Campylobacter-flagella.jpg" alt="The bacterium Campylobacter jejuni with its two flagella. Both flagella are on opposite ends of the bacterium and connected to a motor inside the cell." class="wp-image-3022" width="470" height="462" srcset="https://sarahs-world.blog/wp-content/uploads/Campylobacter-flagella.jpg 940w, https://sarahs-world.blog/wp-content/uploads/Campylobacter-flagella-300x295.jpg 300w, https://sarahs-world.blog/wp-content/uploads/Campylobacter-flagella-768x755.jpg 768w" sizes="(max-width: 470px) 100vw, 470px" /><figcaption><em>Campylobacter jejun</em>i flagella from <a href="https://doi.org/10.1111/1348-0421.12013" target="_blank" rel="noreferrer noopener">Yamamoto <em>et al.</em></a></figcaption></figure></div>



<p class="wp-block-paragraph">Closer to the membrane of the bacterium, the flagellum becomes a so-called hook. This hook is connected to a little motor inside the bacterium. And this motor rotates, which then rotates the hook and thus the flagellum. Now, the flagellum works as helical propeller and this movement pushes the bacterium forward so that it swims. </p>



<div class="wp-block-image"><figure class="aligncenter size-full is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/Campylobacter-flagella-filament.jpg" alt="The bacterial flagella is connected to the bacterium via a hook that rotates and thus propels the flagellum." class="wp-image-3025" width="412" height="230"/><figcaption>The <em>Campylobacter jejuni</em> flagella motor from <a href="https://doi.org/10.1002/mbo3.200" target="_blank" rel="noreferrer noopener">Müller <em>et al</em>.</a></figcaption></figure></div>



<p class="wp-block-paragraph">Since <em>Campylobacteria jejuni</em> <a href="https://doi.org/10.1016/j.mib.2015.09.005" target="_blank" rel="noreferrer noopener">has two flagella of different length</a>, researchers were curious about how this bacterium would move. Two motors would constantly push the bacterium in the opposite direction. Plus, they saw previously that this bacterium can swim faster than other bacteria in slime. But they had no idea how these two flagella would work together.&nbsp;</p>



<h2 class="wp-block-heading">Wrapped in flagella</h2>



<p class="wp-block-paragraph">To see the flagella under the microscope, they changed them slightly. Like this, they could stain the flagella and see them as yellow fluorescent tails under the microscope.</p>



<p class="wp-block-paragraph">They saw that in watery liquids, half of the bacteria had both their flagella spread to both sides and they were swimming slowly. This you can see on the left side in this video. The other half had one flagellum rotating as a tail at the back and the other flagellum was wrapped around the bacterial cell.</p>



<p class="wp-block-paragraph"> </p>



<figure class="wp-block-video aligncenter"><video height="400" style="aspect-ratio: 480 / 400;" width="480" controls src="https://sarahs-world.blog/wp-content/uploads/1qq16-xxq7m-1.mp4"></video><figcaption>Video from <a href="https://doi.org/10.1371/journal.ppat.1008620" target="_blank" rel="noreferrer noopener">Cohen <em>et al.</em>&nbsp;</a></figcaption></figure>



<p class="wp-block-paragraph">In gels (in the video on the right) almost all the bacteria (&gt;95%) had one of their flagella wrapped around their cells. Plus, these cells swam faster and more directed. Mind-blowing!</p>



<h2 class="wp-block-heading">Two motors are better than one</h2>



<p class="wp-block-paragraph">So, the researchers wanted to know why Campylobacter jejuni wraps the flagellum at the front around its cell and how that helps the bacterium to swim faster. They created two mutants of this bacterium: One bacterium did not have a front-flagellum and the other did not have a tail-flagellum.&nbsp;</p>



<p class="wp-block-paragraph">And they looked at how these mutants swam in comparison to the bacterium that has two flagella. In the video below, you can see the bacterium with two flagella on the left, the bacterium with the tail-flagellum in the middle and the bacterium with the front-flagellum on the right.</p>



<figure class="wp-block-video aligncenter"><video height="300" style="aspect-ratio: 360 / 300;" width="360" controls src="https://sarahs-world.blog/wp-content/uploads/4-1.mp4"></video><figcaption>Video from <a href="https://doi.org/10.1371/journal.ppat.1008620" target="_blank" rel="noreferrer noopener">Cohen <em>et al.</em>&nbsp;</a></figcaption></figure>



<p class="wp-block-paragraph">And as you can see, the bacteria in the middle had their tail-flagellum propelling. This pushes the bacterium forward so that it swims. Bacteria with the front-flagellum still swam. And the researchers confirmed that this front-flagellum is still rotating. It works as if it drills the bacterium forward.</p>



<p class="wp-block-paragraph">So, when bacteria have two flagella, it has double the power; and the pushing and drilling together makes this bacterium super fast.</p>



<h2 class="wp-block-heading">Changing direction</h2>



<p class="wp-block-paragraph">Next, the group was interested to see how <em>Campylobacter jejuni</em> changes its swimming direction. Luckily, they managed to film one bacteria at the moment when it decided to swim towards the other side.</p>



<figure class="wp-block-video aligncenter"><video height="110" style="aspect-ratio: 200 / 110;" width="200" controls src="https://sarahs-world.blog/wp-content/uploads/qt9dr-6ma52.mp4"></video><figcaption>Video from <a href="https://doi.org/10.1371/journal.ppat.1008620" target="_blank" rel="noreferrer noopener">Cohen <em>et al.&nbsp;</em></a></figcaption></figure>



<p class="wp-block-paragraph">In this video, you can see that first the front-flagellum changes the direction of its rotation. Like this, it is getting unwrapped from the bacterium. </p>



<p class="wp-block-paragraph">Then, the tail-flagellum also changes its direction of rotation and the bacterium halts its movement. This looks as if the bacterium tumbles trying to get to the new direction.</p>



<p class="wp-block-paragraph">Next, the former tail-flagellum wraps around the bacterium and becomes the front-flagellum. </p>



<p class="wp-block-paragraph">And the former front-flagellum becomes the tail-flagellum and rotates to push the bacterium towards the opposite direction.</p>



<h2 class="wp-block-heading">Two flagella to get to the perfect location</h2>



<p class="wp-block-paragraph">Researchers already knew that other bacteria also wrap their flagella around their cells. But often this happens in trapped places so that the <a href="https://doi.org/10.1073/pnas.1701644114" target="_blank" rel="noreferrer noopener">bacterium tries to protect its flagellum</a>. However, <em>Campylobacter jejuni </em>with its two flagella developed some efficient mechanisms to infect the human body. </p>



<div class="wp-block-image"><figure class="aligncenter size-large is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/C.-jejuni_flagella-1024x774.jpg" alt="The bacterium Campylobacter jejuni swims with its two flagella faster than other bacteria. " class="wp-image-3034" width="512" height="387" srcset="https://sarahs-world.blog/wp-content/uploads/C.-jejuni_flagella-1024x774.jpg 1024w, https://sarahs-world.blog/wp-content/uploads/C.-jejuni_flagella-300x227.jpg 300w, https://sarahs-world.blog/wp-content/uploads/C.-jejuni_flagella-768x580.jpg 768w, https://sarahs-world.blog/wp-content/uploads/C.-jejuni_flagella-1536x1160.jpg 1536w, https://sarahs-world.blog/wp-content/uploads/C.-jejuni_flagella.jpg 1223w" sizes="(max-width: 512px) 100vw, 512px" /><figcaption>Campylobacter jejuni and its two flagella. By <a href="https://sarahs-world.blog/tag/sciart/" target="_blank" rel="noreferrer noopener">Noémie Matthey</a>.</figcaption></figure></div>



<ul class="wp-block-list"><li>Its helical shape helps the bacterium to drill through slimy mucus</li></ul>



<ul class="wp-block-list"><li>A rotating front-flagellum pulls the bacterium actively forward helping with the drilling movement of the bacterium</li></ul>



<ul class="wp-block-list"><li>The tail-flagellum rotates to propel the bacterium forward</li></ul>



<ul class="wp-block-list"><li>By quickly changing its swimming direction, <em>Campylobacter jejun</em>i can escape from confined spaces or maybe even immune cells in the human body</li></ul>



<p class="wp-block-paragraph">I&#8217;m always amazed by what bacteria come up with to escape dangerous situations&#8230;</p>





<p class="wp-block-paragraph">So, now that we better understand how this pathogen moves in our bodies, we better understand how it infects us. This knowledge will now help to fight this pathogen. Let&#8217;s hope that it will help us get rid of such nasty food-poisoning-causing bacteria.&nbsp;</p>
<p>The post <a href="https://sarahs-world.blog/bacteria-wrap-themselves-in-flagella/">Bacteria wrap themselves in their swimming flagella</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
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		<title>Bacteria destroy proteins to understand the environment</title>
		<link>https://sarahs-world.blog/bacteria-destroy-proteins/</link>
					<comments>https://sarahs-world.blog/bacteria-destroy-proteins/#respond</comments>
		
		<dc:creator><![CDATA[Sarah]]></dc:creator>
		<pubDate>Sun, 01 Nov 2020 11:24:00 +0000</pubDate>
				<category><![CDATA[Bacteria and their environment]]></category>
		<category><![CDATA[Antibiotics]]></category>
		<category><![CDATA[Antimicrobial resistance]]></category>
		<category><![CDATA[Bacterial membrane]]></category>
		<category><![CDATA[Bacterial stress response]]></category>
		<category><![CDATA[Physiology]]></category>
		<guid isPermaLink="false">https://sarahs-world.blog/?p=2705</guid>

					<description><![CDATA[<p>For a bacterium to understand what is going on in the environment, it needs some sophisticated mechanisms. One of these includes destroying proteins. Here, we will look at why bacteria destroy proteins and how it helps them to survive.</p>
<p>The post <a href="https://sarahs-world.blog/bacteria-destroy-proteins/">Bacteria destroy proteins to understand the environment</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
]]></description>
										<content:encoded><![CDATA[
<p class="wp-block-paragraph">Bacteria seem to be very lost in their environment.</p>



<p class="wp-block-paragraph">They don&#8217;t have eyes to see what is going on.</p>



<p class="wp-block-paragraph">Neither do they have ears to hear a foe approaching.</p>



<p class="wp-block-paragraph">And yet they seem to know exactly what is happening around them.</p>



<p class="wp-block-paragraph">How is that possible?</p>



<p class="wp-block-paragraph">In other articles, we already looked at different mechanisms of how <a href="https://sarahs-world.blog/category/bacteria-in-the-environment/" target="_blank" rel="noreferrer noopener">bacteria sense their environment</a>. And we learned about various ways bacteria use to know what is going on around them.</p>



<p class="wp-block-paragraph">Here, we will look at another one of these mechanisms. A mechanism in which bacteria destroy proteins <a href="https://doi.org/10.3389/fmolb.2020.586497" target="_blank" rel="noreferrer noopener">to understand the environment and adapt to it</a>.</p>



<p class="wp-block-paragraph">But before we can look at why bacteria destroy proteins, we first need to understand how bacteria produce proteins.</p>



<h2 class="wp-block-heading">Bacteria need proteins to produce proteins</h2>



<p class="wp-block-paragraph">Every living cell, like a bacterial cell or a human cell, contains DNA. And the DNA contains many different sections, which are genes. These genes are the templates for ALL proteins that a cell can produce.</p>



<p class="wp-block-paragraph">A cellular machine called the polymerase (bright blue in the figure below) recognizes the start of a gene (yellow), before it transcribes this gene into a string of mRNA (grey). Next, a ribosome reads the mRNA fragment and translates it into a protein (yellow).</p>



<div class="wp-block-image"><figure class="aligncenter size-full is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/transcription.jpg" alt="the transciption process in bacteria" class="wp-image-2711" width="432" height="360" srcset="https://sarahs-world.blog/wp-content/uploads/transcription.jpg 432w, https://sarahs-world.blog/wp-content/uploads/transcription-300x250.jpg 300w" sizes="(max-width: 432px) 100vw, 432px" /><figcaption>The transcription process in bacteria. Created with <a href="http://biorender.com/">BioRender.com</a></figcaption></figure></div>



<p class="wp-block-paragraph">This is how every living cell produces proteins from DNA.</p>



<p class="wp-block-paragraph">Now, we will focus on the first step: when the polymerase recognizes the start of a gene.</p>



<h2 class="wp-block-heading">Bacteria need proteins to regulate protein production</h2>



<p class="wp-block-paragraph">When you think about it, bacteria do not always need all genes and all proteins. Just as you don&#8217;t need an umbrella when it is sunny outside, but it is always good to keep it handy. Similarly, bacteria have heaps of genes on that long string of DNA and they need some of them only under certain circumstances.</p>



<p class="wp-block-paragraph">For this, all living cells have regulators. These regulators make sure that the polymerase only produces mRNA from genes that are required at a specific time point.</p>



<p class="wp-block-paragraph">And these regulators come in two forms: activators and repressors.</p>



<h3 class="wp-block-heading" id="activators">Activators activate genes</h3>



<p class="wp-block-paragraph">Sometimes, the polymerase cannot recognize a specific gene on its own. This is when the polymerase needs an activator (green).&nbsp;</p>



<p class="wp-block-paragraph">An activator is a protein that binds to a specific gene only when needed. This attracts the polymerase to this gene so that it produces mRNA from that gene. Like that, an activator ensures that bacteria only produce certain proteins when needed.</p>



<div class="wp-block-image"><figure class="aligncenter size-full is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/activators-activate-gene-transciption.jpg" alt="Activators activate gene transcription." class="wp-image-2706" width="432" height="360" srcset="https://sarahs-world.blog/wp-content/uploads/activators-activate-gene-transciption.jpg 432w, https://sarahs-world.blog/wp-content/uploads/activators-activate-gene-transciption-300x250.jpg 300w" sizes="(max-width: 432px) 100vw, 432px" /><figcaption>Activators acivate gene transcription. Created with <a href="http://biorender.com/">BioRender.com</a>.</figcaption></figure></div>



<p class="wp-block-paragraph">This means something else needs to activate the activator at a specific time point. And while some activators are activated by specific systems as explained in <a href="https://sarahs-world.blog/bacteria-sense-environment/">How bacteria sense their environment</a>, sometimes protein-destroying systems are involved. More about that below.</p>



<h3 class="wp-block-heading">Repressors deactivate genes</h3>



<p class="wp-block-paragraph">Repressors (dark blue) do exactly the opposite of activators. These proteins bind specific genes right at the start. This blocks the polymerase from binding the start of that gene and from producing mRNA.</p>



<div class="wp-block-image"><figure class="aligncenter size-full is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/repressor-inhibit-gene-transciption.jpg" alt="Repressors block gene transcription." class="wp-image-2709" width="432" height="360" srcset="https://sarahs-world.blog/wp-content/uploads/repressor-inhibit-gene-transciption.jpg 432w, https://sarahs-world.blog/wp-content/uploads/repressor-inhibit-gene-transciption-300x250.jpg 300w" sizes="(max-width: 432px) 100vw, 432px" /><figcaption>Repressors block gene transcription. Created with <a href="http://biorender.com/">BioRender.com</a></figcaption></figure></div>



<p class="wp-block-paragraph">But when the bacterium needs a specific protein, the polymerase has to recognize and bind that specific gene. At that point, the bacterium has to get rid of the repressor.</p>



<p class="wp-block-paragraph">So, let&#8217;s have a look at how bacteria gain access to genes that need activators or are blocked by repressors.</p>



<h2 class="wp-block-heading">Bacteria destroy proteins to understand the environment</h2>



<p class="wp-block-paragraph">The environment constantly changes for a bacterium. So, all the time, a bacterium needs to produce certain proteins to handle these new situations. Just as you take your umbrella when it is raining suddenly.</p>



<p class="wp-block-paragraph">This is when the bacterium needs the polymerase to recognize a specific gene to make mRNA from it.</p>



<p class="wp-block-paragraph">To get rid of a repressor or to activate an activator when needed, bacteria came up with a simple mechanism: protein destruction.</p>



<p class="wp-block-paragraph">Yes, to produce proteins, sometimes bacteria destroy proteins.</p>



<p class="wp-block-paragraph">Proteins that destroy proteins are called proteases and these work like molecular scissors. Proteases cut proteins in at least one specific location. This makes the protein fall apart and become kaput.&nbsp;</p>



<h2 class="wp-block-heading">When do bacteria destroy proteins?</h2>



<p class="wp-block-paragraph">Different bacteria developed various mechanisms when to destroy specific proteins. And <a href="https://doi.org/10.3389/fmolb.2020.586497" target="_blank" rel="noreferrer noopener">researchers start to understand more and more about this way of regulation</a>.</p>



<p class="wp-block-paragraph">So, let&#8217;s have a look at a few cool examples of bacteria destroying proteins.</p>



<h3 class="wp-block-heading">Radiation leads to protein destruction and survival</h3>



<p class="wp-block-paragraph">For example, the fascinating bacterium <em>Deinococcus deserti</em> has genes to cope with radiation and desiccation. However, the bacterium does not need to produce these proteins when there is no radiation or desiccation. </p>



<p class="wp-block-paragraph">Under these circumstances, the repressor D (dark blue in the figure below) <a href="https://doi.org/10.1111/mmi.12774" target="_blank" rel="noreferrer noopener">blocks these genes and makes sure the polymerase cannot recognize them</a>.</p>



<p class="wp-block-paragraph">But as soon as the bacterium is hit with radiation (lightning), the radiation activates the protease M (red). This protease can now bind the repressor D and destroy it. Now, that the repressor does not block the radiation genes anymore, the polymerase can recognize the genes and produce mRNA from them. Now, the ribosome produces proteins (yellow) that cope with the radiation.&nbsp;</p>



<div class="wp-block-image"><figure class="aligncenter size-full is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/Deinococcus-radians.jpg" alt="Bacteria use proteases to destroy proteins and regulate a radiation response." class="wp-image-2708" width="486" height="432" srcset="https://sarahs-world.blog/wp-content/uploads/Deinococcus-radians.jpg 648w, https://sarahs-world.blog/wp-content/uploads/Deinococcus-radians-300x267.jpg 300w" sizes="(max-width: 486px) 100vw, 486px" /><figcaption><em>Deinococcus deserti</em> destroys proteins after radiation. Created with <a href="http://biorender.com/">BioRender.com</a></figcaption></figure></div>



<p class="wp-block-paragraph">And this is how the bacterium&nbsp;<em>Deinococcus deserti</em> destroys proteins to survive. And yes, this <a href="https://sarahs-world.blog/bacterial-superpowers#radiation">bacterium has the superpowers</a> to withstand radiation and desiccation like no other bacterium.</p>



<h3 class="wp-block-heading" id="AMR">Antibiotics lead to protein destruction and resistance</h3>



<p class="wp-block-paragraph">In another example, <em>Staphylococcus aureus</em> has a similar mechanism to cope with antibiotics and become resistant.&nbsp;</p>



<p class="wp-block-paragraph">In the <a href="https://doi.org/10.1074/jbc.m111.288985" target="_blank" rel="noreferrer noopener">membrane of this bacterium sits the protease R</a> (red) that is generally inactive. However, when the bacterium meets antibiotics (green molecules), the antibiotics change R.&nbsp;</p>



<p class="wp-block-paragraph">Now, the protease falls into the inside of the bacterium and destroys its target protein. This is the repressor I (dark blue), which sits and blocks a certain gene. After protease R destroyed repressor I, this gene is unblocked and the bacterium produces a <a href="https://sarahs-world.blog/about-antimicrobial-resistance-and-their-problems#inactivation" target="_blank" rel="noreferrer noopener">protein (yellow) that cleaves the antibiotic</a>.&nbsp;</p>



<div class="wp-block-image"><figure class="aligncenter size-full is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/Staphylococcus-aureus-protein-destruction.jpg" alt="Bacteria destroy proteins after an antibiotics attack." class="wp-image-2710" width="396" height="432" srcset="https://sarahs-world.blog/wp-content/uploads/Staphylococcus-aureus-protein-destruction.jpg 792w, https://sarahs-world.blog/wp-content/uploads/Staphylococcus-aureus-protein-destruction-275x300.jpg 275w, https://sarahs-world.blog/wp-content/uploads/Staphylococcus-aureus-protein-destruction-768x838.jpg 768w" sizes="(max-width: 396px) 100vw, 396px" /><figcaption><em>Staphylococcus aureus </em>destroys proteins after antibiotics attacks. Created with <a href="http://biorender.com/">BioRender.com</a></figcaption></figure></div>



<p class="wp-block-paragraph">And this is how<em>&nbsp;Staphylococcus aureus</em> <a href="https://sarahs-world.blog/tag/antimicrobial-resistance/" target="_blank" rel="noreferrer noopener">becomes resistant to antibiotics</a> by destroying proteins.</p>



<h3 class="wp-block-heading">Heat leads to protein destruction and survival</h3>



<p class="wp-block-paragraph">But bacteria do not only destroy repressors. They also use a similar mechanism to activate their activators.&nbsp;</p>



<p class="wp-block-paragraph">Generally, to keep an activator inactive, another protein is involved. This is the so-called anti-activator since it captures the activator and inhibits it from functioning. So, for the activator to become active and to bind its specific gene, the anti-activator needs to go. And this is exactly what bacteria do.</p>



<p class="wp-block-paragraph">For example, in the soil bacterium <em>Bacillus subtilis</em>, the anti-activator Y (dark blue) captures the activator S (green). Plus, <a rel="noreferrer noopener" href="https://doi.org/10.1111/mmi.13906" target="_blank">Y brings S to the cellular garbage machine (purpl</a><a rel="noreferrer noopener" href="https://doi.org/10.1111/mmi.13906" target="_blank">e</a><a rel="noreferrer noopener" href="https://doi.org/10.1111/mmi.13906" target="_blank">) to destroy this protein</a>.</p>



<p class="wp-block-paragraph">However, as soon as it is <a rel="noreferrer noopener" href="https://doi.org/10.1111/mmi.12842" target="_blank">getting too hot for the bacterium, Y becomes unstable</a>. So unstable, that it cannot hold S anymore. This means S gets freed, binds its favorite genes and leads the polymerase to them. Now, the bacterium produces proteins (yellow) that help the bacterium to cope with the damage from the heat.</p>



<div class="wp-block-image"><figure class="aligncenter size-full is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/Bacillus-subtilis-heat-1.jpg" alt="bacteria destroy proteins by feeding them into the cellular garbage machine. Anti-activators inhibit activators when they are not needed." class="wp-image-2716" width="486" height="513" srcset="https://sarahs-world.blog/wp-content/uploads/Bacillus-subtilis-heat-1.jpg 648w, https://sarahs-world.blog/wp-content/uploads/Bacillus-subtilis-heat-1-284x300.jpg 284w" sizes="(max-width: 486px) 100vw, 486px" /><figcaption><em>Bacillus subtilis</em> destroys proteins to regulate a response to heat. Created with <a href="http://biorender.com/">BioRender.com</a>.</figcaption></figure></div>



<p class="wp-block-paragraph"><br>And this is how <em>Bacillus subtilis</em> destroys proteins to cope with heat.</p>



<h2 class="wp-block-heading">Destroying proteins means bacteria can survive</h2>



<p class="wp-block-paragraph">Here we explored three different ways of how bacteria destroy proteins for their own benefit. Interestingly, the benefit always handles the incoming signal which is often a sign of stress.</p>





<p class="wp-block-paragraph">Like in&nbsp;<em>Deinococcus deserti</em>, radiation activates protein destruction that leads to protein production. And these new proteins now handle the damage after the radiation attack.</p>



<p class="wp-block-paragraph">Or in <em>Staphylococcus aureus</em>; antibiotics activate a specific protease that destroys a repressor. Now, the produced proteins are meant to destroy the harmful antibiotics.</p>



<p class="wp-block-paragraph">So by closing these circles, bacteria found efficient ways of how to <a rel="noreferrer noopener" href="https://sarahs-world.blog/category/bacteria-in-the-environment/" target="_blank">read their environment and adapt to it</a>.</p>



<p class="wp-block-paragraph">Interestingly, most bacteria seem to use similar mechanisms. This means, the better we understand the way most bacteria work, the better chances we have to fight the nasty ones. So we need to keep researching the good bacteria, to understand the bad guys too!</p>
<p>The post <a href="https://sarahs-world.blog/bacteria-destroy-proteins/">Bacteria destroy proteins to understand the environment</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
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		<title>Sporulation in Bacillus subtilis: A strategy for bacterial hibernation</title>
		<link>https://sarahs-world.blog/bacterial-sporulation/</link>
					<comments>https://sarahs-world.blog/bacterial-sporulation/#respond</comments>
		
		<dc:creator><![CDATA[Sarah]]></dc:creator>
		<pubDate>Sat, 18 Jul 2020 12:09:00 +0000</pubDate>
				<category><![CDATA[Bacterial growth]]></category>
		<category><![CDATA[Bacterial superpowers]]></category>
		<category><![CDATA[Bacterial membrane]]></category>
		<category><![CDATA[Bacterial stress response]]></category>
		<category><![CDATA[Health]]></category>
		<category><![CDATA[Physiology]]></category>
		<category><![CDATA[Quorum sensing]]></category>
		<category><![CDATA[Sporulation]]></category>
		<guid isPermaLink="false">https://sarahs-world.blog/?p=2092</guid>

					<description><![CDATA[<p>When bacteria run out of nutrients, they start a process called sporulation to preserve their genetic material.<br />
This article explores what a bacterial spore is and looks at the details of the sporulation process.</p>
<p>The post <a href="https://sarahs-world.blog/bacterial-sporulation/">Sporulation in Bacillus subtilis: A strategy for bacterial hibernation</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
]]></description>
										<content:encoded><![CDATA[
<p class="wp-block-paragraph"><em>I am Kanika (<a href="https://twitter.com/khannakanika111">@khannakanika111</a>), a former graduate student with Prof. Kit Pogliano and Prof. Elizabeth Villa at UCSD. During my PhD, I studied tiny molecular machineries that are involved in bacterial sporulation using high-resolution imaging methods in cryo-electron microscopy. </em> </p>



<div class="wp-block-group is-layout-flow wp-block-group-is-layout-flow">
<p class="wp-block-paragraph">You probably know that many mammals, reptiles and insects hibernate or go on a long sleep to escape the harsh weather and food scarcity. Hibernation habits can differ depending on the animal. But, essentially, hibernation slows down the organism’s metabolism, heartbeat and body temperature to save energy. </p>



<p class="wp-block-paragraph">Remarkably, even individual cells, like bacteria, have come up with ways to <a href="https://sarahs-world.blog/salmonella-stress/">save energy when food is limited</a>. For instance, many bacterial species of <em>Bacillus</em> and <em>Clostridium</em> have evolved a specialized strategy called <strong>sporulation </strong><a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1111/1758-2229.12130" target="_blank" rel="noreferrer noopener">to survive starvation</a>.</p>



<p class="wp-block-paragraph">In this article, I will explain what sporulation is and why and when bacteria decide to sporulate.</p>
</div>



<h2 class="wp-block-heading">What is bacterial sporulation?</h2>



<p class="wp-block-paragraph">When a bacterium sporulates, it transforms from a rod-shaped bacterial cell (4-10 μm long) to a round, spherical spore (1-1.5 μm long). </p>



<figure class="wp-block-image aligncenter is-resized"><img loading="lazy" decoding="async" width="1024" height="605" src="https://sarahs-world.blog/wp-content/uploads/Bacillus-subtilis-spore-1024x605.png" alt="A bacterial spore consists of a core DNA, a thick peptidoglycan layer and an innner and outer coat." class="wp-image-2106" style="width:495px;height:292px" srcset="https://sarahs-world.blog/wp-content/uploads/Bacillus-subtilis-spore-1024x605.png 1024w, https://sarahs-world.blog/wp-content/uploads/Bacillus-subtilis-spore-300x177.png 300w, https://sarahs-world.blog/wp-content/uploads/Bacillus-subtilis-spore-768x454.png 768w, https://sarahs-world.blog/wp-content/uploads/Bacillus-subtilis-spore-1536x908.png 1536w, https://sarahs-world.blog/wp-content/uploads/Bacillus-subtilis-spore.png 1563w" sizes="(max-width: 1024px) 100vw, 1024px" /><figcaption class="wp-element-caption">Cryo-electron tomogram of a <em>Bacillus subtilis</em> spore. Figure adapted from <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1146/annurev-micro-022520-074650" target="_blank" rel="noreferrer noopener">Khanna<em> et al</em>., 2020</a>. </figcaption></figure>



<p class="wp-block-paragraph">Bacterial spores are surrounded by thick layers of cell wall material or peptidoglycan and many layers of proteins. These make the spore highly resilient and shield it from all kinds of environmental assaults, including UV radiation, desiccation and antibiotics. Within the spore, it protects the genetic material of the parent bacterium. </p>



<p class="wp-block-paragraph">Now the spore is metabolically dormant. This means that the cell has stopped all activities which require energy, like growth and development. </p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" width="791" height="1024" src="https://sarahs-world.blog/wp-content/uploads/B_bacillus-subtilis-791x1024.png" alt="" class="wp-image-4666" style="width:584px;height:756px" srcset="https://sarahs-world.blog/wp-content/uploads/B_bacillus-subtilis-791x1024.png 791w, https://sarahs-world.blog/wp-content/uploads/B_bacillus-subtilis-232x300.png 232w, https://sarahs-world.blog/wp-content/uploads/B_bacillus-subtilis-768x994.png 768w, https://sarahs-world.blog/wp-content/uploads/B_bacillus-subtilis-1187x1536.png 1187w, https://sarahs-world.blog/wp-content/uploads/B_bacillus-subtilis-1583x2048.png 1583w" sizes="(max-width: 791px) 100vw, 791px" /><figcaption class="wp-element-caption"><em>Bacillus subtilis</em> is a master of sporulation.</figcaption></figure>



<div class="wp-block-buttons is-content-justification-center is-layout-flex wp-container-core-buttons-is-layout-3e41869c wp-block-buttons-is-layout-flex">
<div class="wp-block-button has-custom-font-size is-style-fill has-medium-font-size"><a class="wp-block-button__link has-vivid-purple-background-color has-text-color has-background has-text-align-center wp-element-button" href="https://sarahs-world.blog/coloured-bacteria-from-a-to-z/" style="color:#f9d46d" target="_blank" rel="noreferrer noopener"><strong>Learn more about <em>Bacillus subtilis</em> in our colouring book.</strong></a></div>
</div>



<p class="wp-block-paragraph"></p>



<p class="wp-block-paragraph">Spores can remain stable for extremely long periods of time. In fact, researchers found <em>Bacillus</em> spores dating back almost 25 million years in the <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1126/science.7538699" target="_blank" rel="noreferrer noopener">abdomen of extinct bees preserved in Dominican amber</a>. Other samples date <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1038/35038060" target="_blank" rel="noreferrer noopener">back 250 million years from salt crystals</a>.</p>



<h2 class="wp-block-heading">Why study sporulation?</h2>



<p class="wp-block-paragraph">To date, most studies aim to understand sporulation in the model bacterium <em>Bacillus subtilis</em>. <em>Bacillus subtilis</em> is a Gram-positive bacterium with a thick layer of peptidoglycan outside the cellular membrane. </p>



<p class="wp-block-paragraph">One of the major reasons why is it relatively easy to study sporulation in <em>Bacillus subtilis</em> is its natural ability to take up foreign DNA and integrate it into its genome. This provides scientists with a wide range of tools for gene editing in <em>Bacillus subtilis</em>. And they can study the functions of different molecules in space and time during sporulation.</p>



<figure class="wp-block-image aligncenter size-full is-resized"><img loading="lazy" decoding="async" width="640" height="986" src="https://sarahs-world.blog/wp-content/uploads/spore-development-Koch.jpg" alt="Koch’s drawings of Bacillus anthracis during different stages of sporulation. Ferdinand Cohn and Robert Koch first discovered the formation and germination of endospores of Bacillus in the late 1870s." class="wp-image-2107" style="width:480px;height:740px" srcset="https://sarahs-world.blog/wp-content/uploads/spore-development-Koch.jpg 640w, https://sarahs-world.blog/wp-content/uploads/spore-development-Koch-195x300.jpg 195w" sizes="(max-width: 640px) 100vw, 640px" /><figcaption class="wp-element-caption">Koch’s drawings of <em>Bacillus anthracis</em> during different stages of spore development. Ferdinand Cohn and Robert Koch first discovered the formation and germination of endospores of <em>Bacillus</em> in the late 1870s. Adapted from <a href="http://dx.doi.org/10.25646/5064">Koch, 1876</a>. </figcaption></figure>



<p class="wp-block-paragraph">Some bacterial spore-formers can also be pathogenic in a human or animal host. </p>



<p class="wp-block-paragraph">Examples include <em>Bacillus anthracis</em> (the causative agent of anthrax), <em>Clostridium difficile</em> (implicated in colon disease) and <em>Clostridiumm botulinum</em> (implicated in food poisoning). Spores of these pathogenic bacteria can secretly survive inside the host due to their ability to withstand harsh environments. But once they get access to nutrients, they germinate again and become viable bacteria. These bacteria can then release lethal toxins to cause diseases in their respective hosts. </p>



<p class="wp-block-paragraph">There is some good news for the food lovers too though! Spores of a strain of <em>Bacillus subtilis</em>, <em>Bacillus subtilis</em> (natto) are used to ferment soybeans in a traditional Japanese dish called natto. The critical process in natto preparation is the germination of spores which then use nutrients from the soybeans to ferment them. The dish with its powerful smell and flavor is definitely for the bold!</p>



<h2 class="wp-block-heading">How does sporulation work?</h2>



<p class="wp-block-paragraph">Normally, a bacterial cell divides in the middle to produce two identical daughter cells. Researchers call this process binary fission or vegetative growth. </p>



<p class="wp-block-paragraph">But when a bacterium sporulates, the cell divides closer to one end of the cell, near a pole. This leads to the formation of two daughter cells of different sizes. The smaller cell is the <strong>forespore </strong>and the larger cell is the <strong>mother cell.</strong></p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" width="1024" height="988" src="https://sarahs-world.blog/wp-content/uploads/sporulation-pathway-1024x988.png" alt="Sporulation pathway in Bacillus subtilis." class="wp-image-2108" style="width:512px;height:494px" srcset="https://sarahs-world.blog/wp-content/uploads/sporulation-pathway-1024x988.png 1024w, https://sarahs-world.blog/wp-content/uploads/sporulation-pathway-300x290.png 300w, https://sarahs-world.blog/wp-content/uploads/sporulation-pathway-768x741.png 768w, https://sarahs-world.blog/wp-content/uploads/sporulation-pathway-1536x1483.png 1536w, https://sarahs-world.blog/wp-content/uploads/sporulation-pathway-2048x1977.png 2048w, https://sarahs-world.blog/wp-content/uploads/sporulation-pathway.png 957w" sizes="(max-width: 1024px) 100vw, 1024px" /><figcaption class="wp-element-caption">Sporulation pathway in <em>Bacillus subtilis</em>. Adapted from <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1146/annurev-micro-022520-074650" target="_blank" rel="noreferrer noopener">Khanna <em>et al.,</em> 2020</a>.</figcaption></figure>



<p class="wp-block-paragraph">The two cells are separated by a wall made by the invagination of the cell membrane and the peptidoglycan. This wall is the <strong>septum</strong>. </p>



<h3 class="wp-block-heading">Cell division leads to separation between spore and mother cell</h3>



<p class="wp-block-paragraph">Surprisingly, the wall separating the two daughter cells <a href="https://doi.org/10.1128/jb.173.10.3159-3169.1991" target="_blank" rel="noreferrer noopener">is almost four times thinner </a>during sporulation than during vegetative growth (~22 nm vs ~80 nm). </p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" width="1024" height="847" src="https://sarahs-world.blog/wp-content/uploads/chromosome-translocation-1024x847.png" alt="During sporulation, the dividing septum is thinner than during vegetative cell division." class="wp-image-2109" style="width:512px;height:424px" srcset="https://sarahs-world.blog/wp-content/uploads/chromosome-translocation-1024x847.png 1024w, https://sarahs-world.blog/wp-content/uploads/chromosome-translocation-300x248.png 300w, https://sarahs-world.blog/wp-content/uploads/chromosome-translocation-768x635.png 768w, https://sarahs-world.blog/wp-content/uploads/chromosome-translocation.png 1109w" sizes="(max-width: 1024px) 100vw, 1024px" /><figcaption class="wp-element-caption">Thickness of division septum during vegetative growth and sporulation. </figcaption></figure>



<p class="wp-block-paragraph">Scientists have always wondered why the cell would need a thinner septum during sporulation. One reason can be that the forespore and the mother cell need to communicate with each other and exchange certain metabolites. A thinner septum can make this a lot easier because channels don&#8217;t have to go through a thick wall. </p>



<p class="wp-block-paragraph">Another reason could be that the thinner septum is likely more flexible and easier to bend and stretch. Hence, the mother cell can move forward to engulf the forespore so that it is completely inside the mother cell.</p>



<h3 class="wp-block-heading">Transporting DNA into the spore</h3>



<p class="wp-block-paragraph">When a bacterial cell divides vegetatively, it splits the bacterial DNA equally into two daughter cells.&nbsp; But an interesting phenomenon occurs during sporulation. </p>



<p class="wp-block-paragraph">The DNA is <a aria-label="undefined (opens in a new tab)" href="http://doi.org/10.1126/science.8160014" target="_blank" rel="noreferrer noopener">trapped at the septum</a> such that the forespore has only 1/3<sup>rd</sup> of the DNA and the remaining 2/3<sup>rd</sup> stays in the mother cell. A <a aria-label="undefined (opens in a new tab)" href="http://doi.org/10.1126/science.290.5493.995" target="_blank" rel="noreferrer noopener">transporter then pumps the rest of the DNA </a>from the mother cell to the forespore. </p>



<p class="wp-block-paragraph">Packing the whole DNA into the small volume of the forespore probably increases the turgor pressure in the forespore. Hence, the <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1016/j.cell.2018.01.027" target="_blank" rel="noreferrer noopener">forespore inflates like air in a balloon</a> to give it an ovoid shape.</p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" width="461" height="1024" src="https://sarahs-world.blog/wp-content/uploads/engulfment-model-461x1024.png" alt="Chromosome translocation during B. subtilis sporulation." class="wp-image-2110" style="width:346px;height:768px" srcset="https://sarahs-world.blog/wp-content/uploads/engulfment-model-461x1024.png 461w, https://sarahs-world.blog/wp-content/uploads/engulfment-model-135x300.png 135w, https://sarahs-world.blog/wp-content/uploads/engulfment-model.png 567w" sizes="(max-width: 461px) 100vw, 461px" /><figcaption class="wp-element-caption">Chromosome translocation during <em>Bacillus subtilis</em> sporulation.</figcaption></figure>



<h3 class="wp-block-heading">Bringing the spore inside the mother cell</h3>



<p class="wp-block-paragraph">A critical process during endospore formation is when the mother cell engulfs the forespore. This means that instead of lying side by side, the forespore is now within the mother cell. </p>



<p class="wp-block-paragraph">To engulf the forespore, the mother cell has to overcome two barriers: </p>



<p class="wp-block-paragraph">(1) the peptidoglycan that surrounds the bacterial cell on the outside (shown by blue circles in the figure below), and </p>



<p class="wp-block-paragraph">(2) the septum (also peptidoglycan) that separates the two cells (shown by green circles in the figure below). </p>



<figure class="wp-block-image aligncenter size-full is-resized"><img loading="lazy" decoding="async" width="910" height="286" src="https://sarahs-world.blog/wp-content/uploads/peptidoglycan-during-sporulation.jpg" alt="Engulfment model based on coordination between cell wall insertion (orange arrow, 1) and cell wall degradation (black cross, 2) and makes room for movement of mother cell membrane forward" class="wp-image-2122" style="width:683px;height:215px" srcset="https://sarahs-world.blog/wp-content/uploads/peptidoglycan-during-sporulation.jpg 910w, https://sarahs-world.blog/wp-content/uploads/peptidoglycan-during-sporulation-300x94.jpg 300w, https://sarahs-world.blog/wp-content/uploads/peptidoglycan-during-sporulation-768x241.jpg 768w" sizes="(max-width: 910px) 100vw, 910px" /><figcaption class="wp-element-caption">Engulfment model based on coordination between cell wall insertion (orange arrow, 1) and cell wall degradation (black cross, 2). This makes room for movement of the mother cell membrane. Adapted from <a href="http://doi.org/10.7554/eLife.18657">Ojkic et al., 2016</a>.</figcaption></figure>



<p class="wp-block-paragraph">But the septum and the bacterial cell envelope are also connected. At this so-called leading-edge the two peptidoglycan structures meet. Here, critical activity happens. </p>



<p class="wp-block-paragraph">First, enzymes within the forespore (denoted by &#8216;1&#8217; in the figure) make a new bond with the cell wall ahead of the leading edge. With a new bond between the two, the old bond is no longer needed. Thus, enzymes in the mother cell break this old bond (denoted by &#8216;2&#8217; in the figure). </p>



<p class="wp-block-paragraph">Like this, the <a aria-label="undefined (opens in a new tab)" href="http://doi.org/10.7554/eLife.18657" target="_blank" rel="noreferrer noopener">mother cell can slowly move</a> around the spore until it completed warps around it.</p>



<h3 class="wp-block-heading">Wrapping the spore in a thick coat</h3>



<p class="wp-block-paragraph">Once the mother cell engulfed the forespore completely, the spore needs to mature. For this, the mother cell builds thick and protective layers around the spore to protect it from the environment. </p>



<p class="wp-block-paragraph">Ultimately, the mother cell lyses and dies and releases the mature spore into the environment. Only when the environmental conditions become favourable again, spores germinate and normal vegetative growth cycle starts again.&nbsp;</p>



<h2 class="wp-block-heading">Bacterial sporulation &#8211; a tightly regulated process</h2>



<p class="wp-block-paragraph">Although the process of sporulation sounds pretty simple, it can be extremely challenging to comprehend from the point of view of the bacterial cellular machinery. More than 500 genes are active only during sporulation. And these are not active during vegetative growth. </p>



<p class="wp-block-paragraph">Also, some genes are only active in the mother cell and others only active in the forespore. And each stage of spore formation needs to be tightly regulated!</p>



<p class="wp-block-paragraph">The studies of spore formation in <em>Bacillus subtilis</em> have undoubtedly increased our appreciation of what else bacteria are capable of. </p>



<p class="wp-block-paragraph">However, there are still many unanswered questions and unknown genes during sporulation that we need to study. </p>



<p class="wp-block-paragraph">Also, we need to expand these studies to understand sporulation in pathogenic spore-formers like <em>Clostridium difficile</em> and <em>Bacillus anthracis</em> so that we can develop treatments for these disease-causing organisms! </p>



<p class="wp-block-paragraph">Recent sequencing analysis of the <a aria-label="undefined (opens in a new tab)" href="https://sarahs-world.blog/category/our-microbiome/" target="_blank" rel="noreferrer noopener">human gut microbiota</a> also indicate that around 50-60% of bacteria in<a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1038/nature17645" target="_blank" rel="noreferrer noopener"> a healthy host intestine are spore-formers</a>. But we still don’t understand the functional and physiological relevance of the majority of them. </p>



<p class="wp-block-paragraph">There is definitely lots to explore and understand about this one-of-a-kind process of sporulation in bacteria!</p>
<p>The post <a href="https://sarahs-world.blog/bacterial-sporulation/">Sporulation in Bacillus subtilis: A strategy for bacterial hibernation</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
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		<title>How does Salmonella deal with stress &#8211; a bacterial journey through the human body</title>
		<link>https://sarahs-world.blog/salmonella-stress/</link>
					<comments>https://sarahs-world.blog/salmonella-stress/#respond</comments>
		
		<dc:creator><![CDATA[Sarah]]></dc:creator>
		<pubDate>Sat, 04 Jul 2020 13:15:00 +0000</pubDate>
				<category><![CDATA[Bacteria as pathogens]]></category>
		<category><![CDATA[Bacterial stress response]]></category>
		<category><![CDATA[Health]]></category>
		<category><![CDATA[Human body]]></category>
		<category><![CDATA[Physiology]]></category>
		<guid isPermaLink="false">https://sarahs-world.blog/?p=1979</guid>

					<description><![CDATA[<p>When bacteria enter our bodies, they encounter a whole range of stressful situations. However, some pathogens, like Salmonella, learned several clever ways to deal with these stresses. They manage to adapt to the changing temperature, pH and the reduced food available. This helps this bacterium to infect us and even make us sick.</p>
<p>The post <a href="https://sarahs-world.blog/salmonella-stress/">How does Salmonella deal with stress &#8211; a bacterial journey through the human body</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
]]></description>
										<content:encoded><![CDATA[
<p class="wp-block-paragraph">Hi, my name is Rachel (<a aria-label="undefined (opens in a new tab)" href="https://twitter.com/RMBurckhardt" target="_blank" rel="noreferrer noopener">@RMBurckhardt</a>) and I am a big microbe lover. I recently finished my PhD at the University of Georgia studying how bacteria respond to stress. Here I’ll explain a little about how the bacterium Salmonella is able to deal with stress when arriving in the human body and how that can help them make us sick.</p>



<h2 class="wp-block-heading">What does stress mean for bacteria?</h2>



<p class="wp-block-paragraph">For humans, stress can come from juggling work, family, exercise, entertainment, and whatever else life throws at us (like a world-wide pandemic!). Bacteria also can get stressed; however, they experience and react to stress differently than us. <em>Salmonella enterica</em> is a great example of a bacterium that has many ways to deal with different stress in its life. </p>



<p class="wp-block-paragraph">You’ve probably heard of <em>Salmonella enterica</em> because it can cause food poisoning<em>. </em>While there are many different strains of this bacterium, I’ll only be discussing the ones that lead to food poisoning and I’ll refer to it as <em>Salmonella</em> in this post. Unfortunately, there are about <a aria-label="undefined (opens in a new tab)" href="https://www.cdc.gov/salmonella/index.html" target="_blank" rel="noreferrer noopener">1.3 million food poisoning infections</a> a year from <em>Salmonella</em>.</p>



<h2 class="wp-block-heading">About the pathogen <em>Salmonella</em></h2>



<p class="wp-block-paragraph"><em>Salmonella</em> naturally lives in the guts of chickens, so handling chickens or eating undercooked or raw eggs could put you at risk of getting sick. That’s why you’re not supposed to eat raw cookie dough (even though it’s so good). Good hand hygiene and cooking meat and foods thoroughly reduce the risk of getting sick.</p>



<p class="wp-block-paragraph">However, if by any chance a <em>Salmonella</em> bacterium makes its way into our bodies, it travels to the small intestine. Here, it will start to reproduce, leading to diarrhea and stomach cramps associated with food poisoning.</p>



<p class="wp-block-paragraph">But if you think about it, it has to be challenging for <em>Salmonella</em> to live in all those different environments, from chicken guts to the inside of eggs to human stomachs and intestines. Each of these environments has a different temperature, pH, and different nutrients. And the change of just one of these conditions is “stress” for the bacterium. That’s where having the ability to deal with stress comes in handy for Salmonella. </p>



<p class="wp-block-paragraph">Let’s look at each of these challenges for <em>Salmonella</em> bacteria and how they deal with stress.</p>



<h3 class="wp-block-heading">How <em>Salmonella </em>handles temperature stress</h3>



<p class="wp-block-paragraph"><em>Salmonella</em> likes to grow in the warm environments of chicken and human guts. </p>



<p class="wp-block-paragraph">And like humans, bacteria also react to being too cold. This can happen when <em>Salmonella</em> lives in a chicken egg and a chicken lays this egg. All of a sudden, <em>Salmonella</em> lives in outside temperatures. But instead of bundling up with some hot cocoa and a blanket, <em>Salmonella</em> makes proteins to protect itself. </p>



<p class="wp-block-paragraph">When bacteria are too cold, the genetic information (DNA, RNA) stiffens and adopts a shape that’s hard for the cell to use. This is why the cell makes <a aria-label="undefined (opens in a new tab)" href="https://dx.doi.org/10.1155%2F2015%2F520179" target="_blank" rel="noreferrer noopener">special proteins that protect the shape of DNA at colder temperatures</a>. </p>



<p class="wp-block-paragraph">Thus, the cell ‘blankets’ its genetic information to protect it and use it properly.</p>



<figure class="wp-block-image aligncenter size-full"><img loading="lazy" decoding="async" width="432" height="288" src="https://sarahs-world.blog/wp-content/uploads/Cold-shock-response_2.jpg" alt="One way of Salmonella to deal with stress is by adapting to temperature shifts. During cold temperatures, the genetic information  stiffens up and becomes unreadable. Special cold shock proteins keep the DNA intact and protect it." class="wp-image-2077" srcset="https://sarahs-world.blog/wp-content/uploads/Cold-shock-response_2.jpg 432w, https://sarahs-world.blog/wp-content/uploads/Cold-shock-response_2-300x200.jpg 300w" sizes="(max-width: 432px) 100vw, 432px" /><figcaption class="wp-element-caption"><em>Special proteins help protect the shape of DNA at colder temperatures</em>. </figcaption></figure>



<h3 class="wp-block-heading">How <em>Salmonella </em>copes with acid stress</h3>



<p class="wp-block-paragraph">After coping with changing temperatures, <em>Salmonella</em> continues its journey to the human intestine. We consume <em>Salmonella</em> bacteria through contaminated food (like that raw cookie dough). Then they make their way down to the human stomach. </p>



<p class="wp-block-paragraph">But our stomachs are very acidic. This is to help us break down food and kill <a aria-label="undefined (opens in a new tab)" href="https://sarahs-world.blog/category/pathogens/" target="_blank" rel="noreferrer noopener">pathogens</a>. In acidic environments, proteins start to misfold and get destroyed, making them useless to the cell. </p>



<p class="wp-block-paragraph">However, <em>Salmonella</em> and other pathogens know how to cope with this acidic attack. They produce so-called chaperones. These are special proteins that protect other proteins from misfolding. This keeps all other proteins active and thus the cell alive.</p>



<figure class="wp-block-image aligncenter size-full is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/Chaperone.jpg" alt="Chaperones help misfolded proteins to fold correctly during acidic stress. Salmonella deals with stress by rescuing broken proteins." class="wp-image-2078" width="351" height="486" srcset="https://sarahs-world.blog/wp-content/uploads/Chaperone.jpg 468w, https://sarahs-world.blog/wp-content/uploads/Chaperone-217x300.jpg 217w" sizes="(max-width: 351px) 100vw, 351px" /><figcaption class="wp-element-caption"><em>Chaperone proteins take misfolded proteins and help them fold correctly</em>.</figcaption></figure>



<h3 class="wp-block-heading">How <em>Salmonella </em>saves energy when food is limited</h3>



<p class="wp-block-paragraph">Now that <em>Salmonella</em> has survived the highly acidic stomach, it enters the intestines where it can find food and grow. Lots of <a aria-label="undefined (opens in a new tab)" href="https://sarahs-world.blog/what-is-the-gut-microbiome/" target="_blank" rel="noreferrer noopener">bacteria live in our guts</a> and all compete for the same amount of food. </p>



<p class="wp-block-paragraph">For cells to grow, they need energy that comes from food. When food sources are limited, <em>Salmonella</em> cells will <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1111/j.1365-2958.2011.07566.x" target="_blank" rel="noreferrer noopener">conserve energy by ‘turning off’ proteins</a> that consume energy.</p>



<p class="wp-block-paragraph">But why not just get rid of that protein if the cell does not need it anymore? The problem is, making proteins takes energy. If the cell needs the protein it just trashed in the future, the cell must invest more energy into making that protein again. By turning the protein off, the protein is not destroyed and can be used again later when conditions are better. </p>



<p class="wp-block-paragraph">It is similar to changing from a green light to a red light at a traffic light. The red light halts cars from moving at specific times but does not destroy the car. Once traffic conditions favor that direction, the traffic light turns green and the cars can respond quickly and move through the intersection.</p>



<p class="wp-block-paragraph">Similarly, <em>Salmonella</em> turns off its proteins in such a way that it can later remove the modification and restore the activity of the protein. Like this, <em>Salmonella</em> can respond quickly and turn on the protein when food becomes available. Once more food becomes available, <em>Salmonella</em> settles into the gut by eating, growing, and reproducing. </p>



<p class="wp-block-paragraph">Unfortunately, as <em>Salmonella</em> gets comfortable in its new home, we become uncomfortable with fever, stomach aches, and diarrhoea. Now that sounds stressful!</p>



<figure class="wp-block-image aligncenter size-full"><img loading="lazy" decoding="async" width="576" height="324" src="https://sarahs-world.blog/wp-content/uploads/Reversible-modification.jpg" alt="During food limitation, Salmonella turns off certain proteins that waste a lot of energy. When more energy is available, Salmonella can turn these proteins back on to deal with the stress." class="wp-image-2079" srcset="https://sarahs-world.blog/wp-content/uploads/Reversible-modification.jpg 576w, https://sarahs-world.blog/wp-content/uploads/Reversible-modification-300x169.jpg 300w" sizes="(max-width: 576px) 100vw, 576px" /><figcaption class="wp-element-caption"><em>When food is limited, proteins can be &#8216;turned off&#8217; to an inactive state. When more food becomes available, the proteins are &#8216;turned on&#8217; and return to an active state.</em></figcaption></figure>



<h2 class="wp-block-heading"><em>Salmonella</em> knows how to deal with stress</h2>



<p class="wp-block-paragraph">All these mechanisms of stress management allow <em>Salmonella</em> to thrive in a wide variety of environments. From chickens to humans, the road to pathogenesis is wrought with stressful situations. And lucky for <em>Salmonella</em>, it knows just how to deal with each of these situations of stress. </p>



<p class="wp-block-paragraph">The ability to respond to stressful situations is common to bacteria, and each bacterium possesses its own set of proteins and pathways to handle stress and even aid in bacterial virulence. </p>



<p class="wp-block-paragraph">So just like us, bacteria have to handle a lot of stress in their lives. But the more we learn about how pathogens like <em>Salmonella</em> deal with stress, the better we can fight them!</p>



<p class="wp-block-paragraph"><strong>Take away messages from this week’s article</strong></p>



<ul class="wp-block-list">
<li>Bacteria encounter many stresses in the <a aria-label="undefined (opens in a new tab)" href="https://sarahs-world.blog/category/bacteria-in-the-environment/" target="_blank" rel="noreferrer noopener">environment</a></li>



<li>They have various pathways to respond to different types of stress</li>



<li>The ability to deal with varied environments and stress allows pathogens like Salmonella greater virulence and resilience</li>
</ul>
<p>The post <a href="https://sarahs-world.blog/salmonella-stress/">How does Salmonella deal with stress &#8211; a bacterial journey through the human body</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
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		<title>Love thy host: Phages protect bacteria from antibiotics</title>
		<link>https://sarahs-world.blog/phages-protect-bacteria/</link>
					<comments>https://sarahs-world.blog/phages-protect-bacteria/#respond</comments>
		
		<dc:creator><![CDATA[Sarah]]></dc:creator>
		<pubDate>Sat, 02 May 2020 07:56:00 +0000</pubDate>
				<category><![CDATA[The microbial world]]></category>
		<category><![CDATA[Antibiotics]]></category>
		<category><![CDATA[Antimicrobial resistance]]></category>
		<category><![CDATA[Bacterial stress response]]></category>
		<category><![CDATA[Biofilms]]></category>
		<category><![CDATA[Virus]]></category>
		<guid isPermaLink="false">https://sarahs-world.blog/?p=1106</guid>

					<description><![CDATA[<p>The players in the microbial world always interact with each other driving ecology and evolution forward. Bacteriophages thank their bacterial hosts for their production in a very special way: They protect bacteria from antibiotic attacks by forming shielding walls around the cells. While the microbial world gets more and more complex with such mechanisms, it also represents another strategy for antimicrobial resistances.</p>
<p>The post <a href="https://sarahs-world.blog/phages-protect-bacteria/">Love thy host: Phages protect bacteria from antibiotics</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
]]></description>
										<content:encoded><![CDATA[
<p class="wp-block-paragraph">There are ten times <a href="https://doi.org/10.1016/j.femsre.2003.08.001" target="_blank" rel="noreferrer noopener">more phages on this planet than bacteria</a>. And since the main aim of phages is to spread their genomic information into host cells, they have a huge impact on microbial ecology and evolution.</p>



<p class="wp-block-paragraph">Phages are basically genomic information &#8211; DNA or RNA &#8211; within a lipid-protein shell. Distributing their DNA or RNA into as many hosts as possible allows the phages to survive. They then reprogram the host to produce more phages packed with more phage DNA or RNA.</p>



<p class="wp-block-paragraph">These newly produced phages then trigger the host to release themselves which can even kill the bacterium. With the release, the phages are spread further into the surrounding until they encounter another host and the cycle begins again.</p>



<h2 class="wp-block-heading">Of phages and bacteria</h2>



<p class="wp-block-paragraph">Many different bacteriophages exist that specifically infect certain bacteria. So, just as their hosts differ, the phages differ as well. They come in different shapes, sizes and reproductive mechanisms.</p>



<p class="wp-block-paragraph">Some phages have very simple shapes as in the picture below. Here, we will focus on the filamentous phages that can be even longer than the host bacterium itself.</p>



<figure class="wp-block-image size-large"><img loading="lazy" decoding="async" width="1024" height="144" src="https://sarahs-world.blog/wp-content/uploads/filamentous-phages-1024x144.jpg" alt="Filamentous phages can be longer than their host cell." class="wp-image-1108" srcset="https://sarahs-world.blog/wp-content/uploads/filamentous-phages-1024x144.jpg 1024w, https://sarahs-world.blog/wp-content/uploads/filamentous-phages-300x42.jpg 300w, https://sarahs-world.blog/wp-content/uploads/filamentous-phages-768x108.jpg 768w, https://sarahs-world.blog/wp-content/uploads/filamentous-phages-1536x217.jpg 1536w, https://sarahs-world.blog/wp-content/uploads/filamentous-phages.jpg 1560w" sizes="(max-width: 1024px) 100vw, 1024px" /><figcaption class="wp-element-caption">Figure adapted from <a href="https://doi.org/10.15252/embr.201847427" target="_blank" rel="noreferrer noopener">Hay and Lithgow, 2019.</a></figcaption></figure>



<p class="wp-block-paragraph">Filamentous phages are very common in bacteria and they also have a special ability: They program the bacteria in a way that bacteria do not always produce the phage. They control the bacterium and wait until the right moment comes for them to be produced.</p>



<p class="wp-block-paragraph">This means that these bacteria have DNA of the phages inside their own DNA. And only when the phage DNA is activated, the bacteria actually produce the phages. Until then, the phage is a so-called silent phage within the bacterium.</p>



<h2 class="wp-block-heading">Let me be your phage</h2>



<p class="wp-block-paragraph">One bacterium that is infected with a silent phage is the pathogenic bacterium <em>Pseudomonas aeruginosa</em>. Within its genome, <a href="https://doi.org/10.1038/ismej.2008.109" target="_blank" rel="noreferrer noopener">Pseudomonas aeruginosa contains the DNA for the filamentous Pf4 phage</a>. However, it only produces this phage when the <a href="https://sarahs-world.blog/bacteria-building-houses/" target="_blank" rel="noreferrer noopener">bacteria live in a biofilm</a> community.</p>



<p class="wp-block-paragraph">So, it seemed that the phages must somehow help the bacteria in the biofilm. As <a href="https://doi.org/10.1073/pnas.1917726117" target="_blank" rel="noreferrer noopener">a new study</a> found these phages actually help the bacterium become more resistant to <a href="https://sarahs-world.blog/tag/antibiotics/">antibiotics</a> and chemical and toxic substances inside the biofilm.</p>



<p class="wp-block-paragraph">But the way the phages achieve that is a fantastic <a href="https://sarahs-world.blog/tag/antimicrobial-resistance/" target="_blank" rel="noreferrer noopener">antibiotic resistance mechanism</a> that was not known before. To learn about the strategy, researchers took images with the microscope of the Pf4 filamentous phage. And they found these long phage filaments.</p>



<figure class="wp-block-image aligncenter size-medium is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/filaments-300x190.jpg" alt="phage filaments visualised by cryo EM
" class="wp-image-1113" width="372" height="236" srcset="https://sarahs-world.blog/wp-content/uploads/filaments-300x190.jpg 300w, https://sarahs-world.blog/wp-content/uploads/filaments.jpg 327w" sizes="(max-width: 372px) 100vw, 372px" /><figcaption class="wp-element-caption">Figure adapted from <a rel="noreferrer noopener" href="https://doi.org/10.1073/pnas.1917726117" target="_blank">Tarafder et al, 2020.</a></figcaption></figure>



<h2 class="wp-block-heading">I wrap around you</h2>



<p class="wp-block-paragraph">While these structures were pretty impressive, they didn’t explain how the phages would actually behave within the biofilm together with <em>Pseudomonas aeruginosa.</em></p>



<p class="wp-block-paragraph">So, the researchers added some artificial biofilm from the bacterium to the phages. They then looked at the phages again in the microscope and they saw that the phage assembled and formed ordered filaments. These looked like highly organised nets of phages.</p>



<h2 class="wp-block-heading">I protect you</h2>



<p class="wp-block-paragraph">The researchers then wanted to see how the bacteria could fit into these nets. So, they took images of the phages together with the bacteria. And they saw that the phages form their nets close to the bacterial cells just as in the picture below.</p>



<figure class="wp-block-image size-large"><img loading="lazy" decoding="async" width="740" height="467" src="https://sarahs-world.blog/wp-content/uploads/shield.jpg" alt="The Pf4 phage net can wrap around a bacterial cell." class="wp-image-1109" srcset="https://sarahs-world.blog/wp-content/uploads/shield.jpg 740w, https://sarahs-world.blog/wp-content/uploads/shield-300x189.jpg 300w, https://sarahs-world.blog/wp-content/uploads/shield-200x125.jpg 200w" sizes="(max-width: 740px) 100vw, 740px" /><figcaption class="wp-element-caption">Figure adapted from <a href="https://doi.org/10.1073/pnas.1917726117" target="_blank" rel="noreferrer noopener">Tarafder et al, 2020.</a></figcaption></figure>



<p class="wp-block-paragraph">It seemed that the phage nets wrapped closely around the bacterial cells. Like this, the phages would form a droplet shape around the bacterial cell and separate it from the surrounding.</p>



<figure class="wp-block-image size-large"><img loading="lazy" decoding="async" width="731" height="387" src="https://sarahs-world.blog/wp-content/uploads/droplet.jpg" alt="Phages form droplet around bacterial cells to protect them from antibiotics." class="wp-image-1110" srcset="https://sarahs-world.blog/wp-content/uploads/droplet.jpg 731w, https://sarahs-world.blog/wp-content/uploads/droplet-300x159.jpg 300w" sizes="(max-width: 731px) 100vw, 731px" /><figcaption class="wp-element-caption">Figure adapted from <a rel="noreferrer noopener" href="https://doi.org/10.1073/pnas.1917726117" target="_blank">Tarafder et al, 2020.</a></figcaption></figure>



<p class="wp-block-paragraph">And these droplets are the foundation for the resistance to antibiotics of the bacteria. When researchers added different antibiotics to the phage-bacteria-droplets, the bacteria survived.</p>



<p class="wp-block-paragraph">On the contrary, the bacteria on their own were dying from the antibiotic attack.</p>



<p class="wp-block-paragraph">This means, that the phage net works as a wall to protect the encapsulated bacterium from toxic molecules in the surrounding. This is a completely new and remarkable mechanism of bacteria to protect themselves from environmental dangers. And they use their very own phages to do that!</p>



<p class="wp-block-paragraph">It seems that another race against <a href="https://sarahs-world.blog/about-antimicrobial-resistance-and-their-problems/" target="_blank" rel="noreferrer noopener">antimicrobial resistance</a> just started…</p>



<h2 class="wp-block-heading">And then I start again</h2>



<p class="wp-block-paragraph">Let’s put it all together and have a <a href="https://doi.org/10.1111/1462-2920.15046" target="_blank" rel="noreferrer noopener">look at the life cycle of these phages</a>:</p>



<p class="wp-block-paragraph"><em>Pseudomonas aeruginosa</em> carries genes for the Pf4 phage in its genome and only activates them when it grows within a biofilm. At this moment, <em>Pseudomonas</em> produces both biofilm material and the Pf4 phage. These released phages then form nets around the bacterial cells. With this net, the phages protect bacteria from antibiotics and other toxic substances.</p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" src="https://i2.wp.com/sarahs-world.blog/wp-content/uploads/20200502_111204-compressor.jpg?fit=678%2C538&amp;ssl=1" alt="Phages form structured nets around bacteria to wall them off the environment and protect them from environmental dangers like antibiotics." class="wp-image-1134" width="509" height="404" srcset="https://sarahs-world.blog/wp-content/uploads/20200502_111204-compressor.jpg 1165w, https://sarahs-world.blog/wp-content/uploads/20200502_111204-compressor-300x238.jpg 300w, https://sarahs-world.blog/wp-content/uploads/20200502_111204-compressor-1024x812.jpg 1024w, https://sarahs-world.blog/wp-content/uploads/20200502_111204-compressor-768x609.jpg 768w, https://sarahs-world.blog/wp-content/uploads/20200502_111204-compressor-1536x1218.jpg 1536w" sizes="(max-width: 509px) 100vw, 509px" /><figcaption class="wp-element-caption">Phages protecting bacteria by <a rel="noreferrer noopener" href="http://www.twitter.com/NoemieMatthey" target="_blank">Noémie Matthey.</a></figcaption></figure>



<p class="wp-block-paragraph">So, it seems that phages protect their own hosts from environmental dangers. After having hijacked the bacteria’s cell for their own production, it’s actually a pretty nice thing to do.</p>
<p>The post <a href="https://sarahs-world.blog/phages-protect-bacteria/">Love thy host: Phages protect bacteria from antibiotics</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
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		<title>Bacteria firing toxic bubbles</title>
		<link>https://sarahs-world.blog/bacteria-firing-toxic-bubbles/</link>
					<comments>https://sarahs-world.blog/bacteria-firing-toxic-bubbles/#comments</comments>
		
		<dc:creator><![CDATA[Sarah]]></dc:creator>
		<pubDate>Fri, 27 Mar 2020 07:42:25 +0000</pubDate>
				<category><![CDATA[Bacterial wars]]></category>
		<category><![CDATA[Antibiotics]]></category>
		<category><![CDATA[Bacterial communication]]></category>
		<category><![CDATA[Bacterial interactions]]></category>
		<category><![CDATA[Bacterial membrane]]></category>
		<category><![CDATA[Bacterial stress response]]></category>
		<category><![CDATA[Secondary metabolism]]></category>
		<guid isPermaLink="false">https://sarahs-world.blog/?p=689</guid>

					<description><![CDATA[<p>Bacteria can form outer membrane vesicles and fill them with antibiotics. They then send these toxic bubbles off to kill competing bacteria. </p>
<p>The post <a href="https://sarahs-world.blog/bacteria-firing-toxic-bubbles/">Bacteria firing toxic bubbles</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
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										<content:encoded><![CDATA[
<p class="wp-block-paragraph">When you think of <a href="https://sarahs-world.blog/category/bacterial-wars/" target="_blank" rel="noreferrer noopener">bacterial wars</a>, you probably think of bows and arrows and sticks and nano weapons. But what if I told you that bacteria fight each other with bubbles? </p>



<p class="wp-block-paragraph">Yes, bubbles!</p>



<p class="wp-block-paragraph">No, bacteria don&#8217;t just produce bubbles and try to hit another microbe with them. They are more sneaky. Bacteria fill these bubbles with <a href="https://sarahs-world.blog/tag/antibiotics/" target="_blank" rel="noreferrer noopener">antibiotics</a>. And antibiotics are toxic and kill microbes.</p>



<p class="wp-block-paragraph">So, when these toxic bubbles hit other bacteria, they will suffer.</p>



<p class="wp-block-paragraph">Let&#8217;s look at where these bubbles come from and why bacteria decide to fill them with antibiotics.</p>



<h2 class="wp-block-heading">Bacteria and their membrane(s)</h2>



<p class="wp-block-paragraph">Bacteria come in one of two kinds. They can have <a href="https://sarahs-world.blog/tag/bacterial-membrane/">one or two cell membranes</a>. </p>



<p class="wp-block-paragraph">If a bacterium has one cell membrane, it is called Gram-positive. If it has two cell membranes, an inner and an outer membrane, it belongs to the Gram-negative bacteria. </p>



<p class="wp-block-paragraph">The <a href="https://sarahs-world.blog/bacteria-grow-membranes/" target="_blank" rel="noreferrer noopener">outer and inner membranes of Gram-negative bacteria</a> are slightly different. Interestingly, the inner membrane of Gram-negative bacteria is the same as the cell membrane of Gram-positive bacteria. But in Gram-positive bacteria, that membrane has a lot of additional stuff to make it thicker.</p>



<p class="wp-block-paragraph">Because Gram-negative bacteria have two membranes, their outer membranes can form &#8220;blebs&#8221;. These blebs, also called vesicles, eventually form round spheres &#8211; or bubbles &#8211; and detach from the membrane which is how they are released into the environment.</p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/outer-membrane-vesicle-formation.jpeg" alt="outer membrane vesicle formation in Gram-negative bacteria" class="wp-image-2004" width="646" height="404" srcset="https://sarahs-world.blog/wp-content/uploads/outer-membrane-vesicle-formation.jpeg 576w, https://sarahs-world.blog/wp-content/uploads/outer-membrane-vesicle-formation-300x188.jpeg 300w" sizes="(max-width: 646px) 100vw, 646px" /><figcaption class="wp-element-caption">Gram-negative bacteria can form bubbles &#8211; outer membrane vesicles &#8211; from their outer membrane. </figcaption></figure>



<h3 class="wp-block-heading">Bacteria and their outer membrane bubbles</h3>



<p class="wp-block-paragraph">As you can see, these bubbles are made from the outer membrane of Gram-negative bacteria. This is why they are called outer membrane vesicles. These are basically a double layer of lipids in the form of a sphere with stuff inside.&nbsp;</p>



<p class="wp-block-paragraph">Within these bubbles, bacteria pack anything that they want to get rid of. This can be cell junk and can come from cell machines that don&#8217;t work anymore. Bacteria can get rid of that stuff by throwing it out. </p>



<h2 class="wp-block-heading" id="violacein">About <em>Chromobacterium violaceum</em></h2>



<p class="wp-block-paragraph">One bacterium that produces these outer membrane vesicles is <em>Chromobacterium violaceum</em>. And this one has a special reason to produce bubbles: it uses them to kill other bacteria.</p>



<p class="wp-block-paragraph"><em>Chromobacterium violaceum </em>produces the <a href="https://sarahs-world.blog/tag/antibiotics/" target="_blank" rel="noreferrer noopener">antibiotic </a>violacein. Violacein is a purple molecule and turns <em>Chromobacterium </em>colonies into purple dots. </p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/Chromobacterium.jpg" alt="Chromobacterium violaceum colonies turn purple" class="wp-image-2005" width="443" height="445" srcset="https://sarahs-world.blog/wp-content/uploads/Chromobacterium.jpg 750w, https://sarahs-world.blog/wp-content/uploads/Chromobacterium-300x300.jpg 300w, https://sarahs-world.blog/wp-content/uploads/Chromobacterium-150x150.jpg 150w" sizes="(max-width: 443px) 100vw, 443px" /><figcaption class="wp-element-caption"><em>Chromobacterium violaceum</em>&nbsp;on a chocolate agar plate. Picture taken from <a aria-label="de Siqueira et al, 2005 (opens in a new tab)" href="https://dx.doi.org/10.3201%2Feid1109.050278" target="_blank" rel="noreferrer noopener">de Siqueira<em> et al,</em> 2005</a>.</figcaption></figure>



<p class="wp-block-paragraph">Since violacein is an <a href="https://sarahs-world.blog/antibiotics-produced-by-bacteria/">antibiotic, it kills other bacteria.</a> However, this antibiotic only kills Gram-positive bacteria, those with only one cell membrane.</p>



<p class="wp-block-paragraph">The problem with violacein is, that it is a very hydrophobic molecule. This means that it is insoluble&nbsp;in water. Hence,&nbsp;researchers were interested to find out how <em>Chromobacterium </em>transports violacein through water to other bacteria.&nbsp;</p>



<h2 class="wp-block-heading"><em>Chromobacterium violaceum</em> bacteria produce toxic bubbles</h2>



<p class="wp-block-paragraph">So, <a href="https://doi.org/10.1111/1462-2920.14888" target="_blank" rel="noreferrer noopener">researchers had a look at <em>Chromobacterium </em>cells</a>. They saw that these bacteria produce bubbles from their outer membrane. And they do indeed look like spikey bubbles as in the picture below.</p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/OMVs-closeup.jpg" alt="Chromobacterium violaceum produces outer membrane vesicles." class="wp-image-2006" width="562" height="737" srcset="https://sarahs-world.blog/wp-content/uploads/OMVs-closeup.jpg 749w, https://sarahs-world.blog/wp-content/uploads/OMVs-closeup-229x300.jpg 229w" sizes="(max-width: 562px) 100vw, 562px" /><figcaption class="wp-element-caption"><em>Chromobacterium violaceum</em> produces outer membrane vesicles. Picture adapted from <a aria-label="Choi et al, 2020.  (opens in a new tab)" href="https://sfamjournals.onlinelibrary.wiley.com/doi/10.1111/1462-2920.14888" target="_blank" rel="noreferrer noopener">Choi et al, 2020. </a></figcaption></figure>



<p class="wp-block-paragraph">The researchers then purified the vesicles and added them to <em>Staphylococcus aureus</em>, a Gram-positive bacterium. The vesicles killed <em>Staphylococcus aureus</em>, hence the researchers thought that the violacein would be inside these vesicles.</p>



<p class="wp-block-paragraph">Then they grew a <em>Chromobacterium </em>mutant that did not produce any violacein. But this mutant still produced outer membrane vesicles. Surprisingly, the vesicles from this mutant did not kill <em>Staphylococcus aureus</em>. </p>



<p class="wp-block-paragraph">From this, the researchers concluded that <em>Chromobacterium </em>transports the violacein within the bubbles.</p>



<p class="wp-block-paragraph">This meant that the researchers found new functions for outer membrane vesicles. Hence, bacteria use them</p>



<p class="wp-block-paragraph">a) to solubilise a hydrophobic molecule</p>



<p class="wp-block-paragraph">b) to transport a hydrophobic and toxic molecule towards other bacteria</p>



<p class="wp-block-paragraph">c) as <a href="https://sarahs-world.blog/category/bacterial-warfare/" target="_blank" rel="noreferrer noopener">bacterial weapons</a></p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/comic-1024x782.jpeg" alt="Chromombacterium transports violacein within outer membrane vesicles to kill other bacteria" class="wp-image-1196" width="512" height="391" srcset="https://sarahs-world.blog/wp-content/uploads/comic-1024x782.jpeg 1024w, https://sarahs-world.blog/wp-content/uploads/comic-300x229.jpeg 300w, https://sarahs-world.blog/wp-content/uploads/comic-768x586.jpeg 768w, https://sarahs-world.blog/wp-content/uploads/comic-1536x1172.jpeg 1536w, https://sarahs-world.blog/wp-content/uploads/comic.jpeg 1211w" sizes="(max-width: 512px) 100vw, 512px" /><figcaption class="wp-element-caption"><em>Chromobacterium violaceum</em> sends off toxic bubbles filled with the antibiotic violacein to kill other bacteria. Comic by <a aria-label="Noemie Matthey (opens in a new tab)" rel="noreferrer noopener" href="https://twitter.com/noemiematthey?lang=en" target="_blank">Noémie Matthey</a>.</figcaption></figure>



<p class="wp-block-paragraph">Now, this concept gives <a href="https://doi.org/10.1111/1758-2229.12839" target="_blank" rel="noreferrer noopener">researchers interesting possibilities to apply outer membrane vesicles</a>. </p>



<p class="wp-block-paragraph">Maybe, one day we will find a way to <a href="https://sarahs-world.blog/bacteria-transport-drugs/">fill these bubbles with therapeutic molecules</a> and send them towards tumour&nbsp;cells or we just found a new way to deliver antimicrobial substances in general.</p>



<p class="wp-block-paragraph">For sure, scientists will come up with some cool new ideas to use outer membrane vesicles in the clinic, but as always, that requires a lot more research ?</p>
<p>The post <a href="https://sarahs-world.blog/bacteria-firing-toxic-bubbles/">Bacteria firing toxic bubbles</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
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