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	<title>Desulfovibrio: sulfate-breathing bacteria reshaping surroundings</title>
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	<description>A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</description>
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	<title>Desulfovibrio: sulfate-breathing bacteria reshaping surroundings</title>
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		<title>How bacteria read and follow the Earth&#8217;s magnetic field</title>
		<link>https://sarahs-world.blog/magnetotactic-bacteria/</link>
					<comments>https://sarahs-world.blog/magnetotactic-bacteria/#comments</comments>
		
		<dc:creator><![CDATA[Sarah]]></dc:creator>
		<pubDate>Sat, 11 Jul 2020 11:02:00 +0000</pubDate>
				<category><![CDATA[Bacteria and their environment]]></category>
		<category><![CDATA[Bacterial superpowers]]></category>
		<category><![CDATA[Bacterial movement]]></category>
		<category><![CDATA[Chemotaxis]]></category>
		<category><![CDATA[Microbial communities]]></category>
		<category><![CDATA[Physiology]]></category>
		<guid isPermaLink="false">https://sarahs-world.blog/?p=2134</guid>

					<description><![CDATA[<p>Magnetotactic bacteria have magnetosomes with which they can sense magnetic field lines. This allows magnetotactic bacteria to swim towards North or South to find the perfect location in the deep and dark water.</p>
<p>The post <a href="https://sarahs-world.blog/magnetotactic-bacteria/">How bacteria read and follow the Earth&#8217;s magnetic field</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
]]></description>
										<content:encoded><![CDATA[
<p class="wp-block-paragraph">As we&#8217;ve learned so far, bacteria live pretty much everywhere on our planet. Even in the cold and dark ocean. But how do these bacteria know where they are? How do they not get lost? Interestingly, magnetotactic bacteria have the fascinating ability to read the Earth&#8217;s magnetic field lines to know where they are. </p>



<p class="wp-block-paragraph">Read on to learn what this fascinating superpower is and why magnetotactic bacteria work like a compass.</p>



<h2 class="wp-block-heading">What are magnetotactic bacteria?</h2>



<p class="wp-block-paragraph">So-called magnetotactic bacteria are those bacteria that sense magnetic field lines and align with them. They then decide whether they swim toward the North or the South.</p>



<p class="wp-block-paragraph">To actively swim through water, magnetotactic bacteria, like many other bacteria, have <a href="https://sarahs-world.blog/tag/flagella" target="_blank" rel="noreferrer noopener">flagella</a>. And they can have one flagellum on one side or one on each side or a bundle of flagella.</p>



<p class="wp-block-paragraph">So far, researchers found magnetotactic bacteria on the whole planet and they mostly live in water sediments and oceans. Some magnetotactic bacteria even live <a href="https://doi.org/10.1128/AEM.03018-09" target="_blank" rel="noreferrer noopener">in extreme spots</a> like the hot springs in northern Nevada. Here, they grow happily at about 55 °C.&nbsp;</p>



<p class="wp-block-paragraph">Researchers gave these fascinating bacteria names that already let you guess their superpowers: <em>Magnetospirillum magnetotacticum, Magnetospirillum magneticum, Magnetospirillum gryphiswaldense, Magnetococcus marinus or Desulfovibrio magneticus.</em> And obviously, scientists keep discovering new species that can sense magnetic field lines.</p>



<figure class="wp-block-image aligncenter size-large is-resized"><img fetchpriority="high" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/Magnetospirillum-magnetotacticum-1024x1024.jpg" alt="" class="wp-image-4663" style="width:645px;height:645px" width="645" height="645" srcset="https://sarahs-world.blog/wp-content/uploads/Magnetospirillum-magnetotacticum.jpg 924w, https://sarahs-world.blog/wp-content/uploads/Magnetospirillum-magnetotacticum-300x300.jpg 300w, https://sarahs-world.blog/wp-content/uploads/Magnetospirillum-magnetotacticum-150x150.jpg 150w, https://sarahs-world.blog/wp-content/uploads/Magnetospirillum-magnetotacticum-768x768.jpg 768w" sizes="(max-width: 645px) 100vw, 645px" /><figcaption class="wp-element-caption"><em>Magnetospirillum magnetotacticum</em> reads the Earth&#8217;s magnetic field lines.</figcaption></figure>



<div class="wp-block-buttons is-content-justification-center is-layout-flex wp-container-core-buttons-is-layout-3e41869c wp-block-buttons-is-layout-flex">
<div class="wp-block-button has-custom-font-size is-style-fill has-medium-font-size"><a class="wp-block-button__link has-vivid-purple-background-color has-text-color has-background has-text-align-center wp-element-button" href="https://sarahs-world.blog/coloured-bacteria-from-a-to-z/" style="color:#f9d46d" target="_blank" rel="noreferrer noopener"><strong>Learn more about <em>Magnetospirillum magnetotacticum</em> in our colouring book.</strong></a></div>
</div>



<p class="wp-block-paragraph"></p>



<p class="wp-block-paragraph">Okay, now we know what magnetotactic bacteria are. Let&#8217;s look at what gives magnetotactic bacteria their superpowers to read magnetic field lines.</p>



<h2 class="wp-block-heading">What are magnetosomes?</h2>



<p class="wp-block-paragraph">Magnetotactic bacteria can sense magnetic field lines because they have so-called magnetosomes. </p>



<p class="wp-block-paragraph">Magnetosomes are tiny crystals of iron oxide or iron sulfide. And these crystals are surrounded by a lipid membrane within a so-called organelle. Magnetosome organelles lie within the bacterium and import and export iron from the bacterial cytosol.</p>



<p class="wp-block-paragraph">These magnetosomes can have different shapes and sizes. Some crystals are <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1111/1462-2920.15098" target="_blank" rel="noreferrer noopener">cuboctahedral, prismal-shaped or even bullet-shaped</a>.&nbsp;Like the super cool magnetosomes in the pictures below.</p>



<figure class="wp-block-image size-large"><img decoding="async" width="1024" height="522" src="https://sarahs-world.blog/wp-content/uploads/magnetosome-shapes-1024x522.jpg" alt="Magnetosomes in magnetotactic bacteria can have different shapes and sizes and can be prismal, bullet or octahedrical-shaped." class="wp-image-2135" srcset="https://sarahs-world.blog/wp-content/uploads/magnetosome-shapes-1024x522.jpg 1024w, https://sarahs-world.blog/wp-content/uploads/magnetosome-shapes-300x153.jpg 300w, https://sarahs-world.blog/wp-content/uploads/magnetosome-shapes-768x392.jpg 768w, https://sarahs-world.blog/wp-content/uploads/magnetosome-shapes-1536x784.jpg 1536w, https://sarahs-world.blog/wp-content/uploads/magnetosome-shapes.jpg 1670w" sizes="(max-width: 1024px) 100vw, 1024px" /><figcaption class="wp-element-caption">Figure adapted from <a href="https://doi.org/10.1128/JB.01371-07" target="_blank" rel="noreferrer noopener">Scheffel <em>et al,</em> 2008</a>, <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1099/ijs.0.044453-0" target="_blank" rel="noreferrer noopener">Bazylinski <em>et al,</em> 2013</a>, <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1099/ijs.0.037697-0" target="_blank" rel="noreferrer noopener">Williams <em>et al</em>, 2012</a>, <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1093/femsle/fnz253" target="_blank" rel="noreferrer noopener">Pan <em>et al</em> 2019</a><a href="https://doi.org/10.1093/femsle/fnz253">.</a></figcaption></figure>



<p class="wp-block-paragraph">As you can see in the pictures, bacteria do not only have one magnetosome but several. And these magnetosomes can align in a perfectly straight line or cluster together on one side of the bacterium.</p>



<figure class="wp-block-image size-large"><img decoding="async" width="1024" height="605" src="https://sarahs-world.blog/wp-content/uploads/magnetosome-chains-1024x605.jpg" alt="Magnetosomes align within magnetotactic bacteria as straight lines or as clusters." class="wp-image-2136" srcset="https://sarahs-world.blog/wp-content/uploads/magnetosome-chains-1024x605.jpg 1024w, https://sarahs-world.blog/wp-content/uploads/magnetosome-chains-300x177.jpg 300w, https://sarahs-world.blog/wp-content/uploads/magnetosome-chains-768x453.jpg 768w, https://sarahs-world.blog/wp-content/uploads/magnetosome-chains.jpg 1284w" sizes="(max-width: 1024px) 100vw, 1024px" /><figcaption class="wp-element-caption">Figure adapted from <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1111/1462-2920.15098" target="_blank" rel="noreferrer noopener">Amor <em>et al</em>.</a>, 2020.</figcaption></figure>



<p class="wp-block-paragraph">For a magnetosome chain or cluster to work, bacteria need to keep their shapes perfectly. For this, magnetotactic bacteria use so-called scaffold proteins. These<a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1038/s41564-019-0512-8" target="_blank" rel="noreferrer noopener"> scaffold proteins position</a> the magnetosome within the bacterium and hold this chain in its place.</p>



<h3 class="wp-block-heading">How do magnetotactic bacteria grow magnetosomes?</h3>



<p class="wp-block-paragraph">Because magnetosomes are made of iron, magnetotactic bacteria have very special iron uptake systems.  These iron importers help the bacteria get as much iron into the cell as possible.</p>



<p class="wp-block-paragraph">Then the bacterium needs to transport the iron toward the magnetosome.&nbsp;The problem is that free iron is actually toxic to the cell. </p>



<p class="wp-block-paragraph">Hence, the bacterium needs to assure the iron does not come into contact with the cell content. Therefore, magnetotactic bacteria produce iron transporters that shield the iron from the surrounding.&nbsp;</p>



<p class="wp-block-paragraph">Now, the bacterium <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1111/1462-2920.15098" target="_blank" rel="noreferrer noopener">needs to carefully crystallise the iron</a> to grow the magnetosome. This process is actually not well understood yet and researchers are on it to shed light on it.</p>



<p class="wp-block-paragraph">Okay, now we know what magnetosomes are and how they are formed. Let&#8217;s look at how magnetosomes help bacteria sense the Earth&#8217;s magnetic field.</p>



<h2 class="wp-block-heading">How do magnetotactic bacteria sense magnetic field lines?</h2>



<p class="wp-block-paragraph">Because magnetosomes are highly-concentrated iron crystals, <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1016/j.tim.2019.10.012" target="_blank" rel="noreferrer noopener">they have a magnetic dipole</a>. And since a bacterium has many magnetosomes aligned in a straight line, the magnetic dipole is increased.</p>



<p class="wp-block-paragraph">So, the magnetosome chain works similarly to a compass needle and aligns along magnetic field lines. Just as a compass needle aligns with magnetic field lines and you align your position according to the compass needle.</p>



<p class="wp-block-paragraph">And we have the scaffolding proteins that keep the magnetosome chains in place within the bacterium. Because of them, the whole bacterium aligns with the magnetosomes. So, when you think about it; the bacterium aligns with the magnetic field lines in a passive way.</p>



<p class="wp-block-paragraph">Imagine you put a worm on a compass needle that it can&#8217;t move away from. The compass needle will always point North and thus the worm will always point North as well. So, no matter where the compass goes or how fast you turn yourself with that compass, the needle and the worm will always face north. But the worm is only aligning North passively. Same as the bacterium.</p>



<p class="wp-block-paragraph">As we said at the beginning, magnetotactic bacteria always have a flagellum that helps them swim around. Similar to other motile bacteria, a bacterium swims because it rotates its flagellum. This moves the bacterium forward or backward.</p>



<p class="wp-block-paragraph">But since the magnetotactic bacterium is aligned to the North or South, it will only swim toward the North or South.</p>



<figure class="wp-block-image size-large"><img loading="lazy" decoding="async" width="1024" height="784" src="https://sarahs-world.blog/wp-content/uploads/magnetotactic-bacteria-1024x784.jpg" alt="Magnetotactic bacteria have magnetosomes to sense the Earth´s magnetic field lines and move towards the North- or Southpole." class="wp-image-2142" srcset="https://sarahs-world.blog/wp-content/uploads/magnetotactic-bacteria-1024x784.jpg 1024w, https://sarahs-world.blog/wp-content/uploads/magnetotactic-bacteria-300x230.jpg 300w, https://sarahs-world.blog/wp-content/uploads/magnetotactic-bacteria-768x588.jpg 768w, https://sarahs-world.blog/wp-content/uploads/magnetotactic-bacteria-1536x1176.jpg 1536w, https://sarahs-world.blog/wp-content/uploads/magnetotactic-bacteria-rotated.jpg 1207w" sizes="(max-width: 1024px) 100vw, 1024px" /><figcaption class="wp-element-caption">&#8220;Magnetotactic bacteria&#8221; by <a href="http://twitter.com/noemiematthey" target="_blank" aria-label="undefined (opens in a new tab)" rel="noreferrer noopener">Noémie Matthey</a>.</figcaption></figure>



<p class="wp-block-paragraph">And researchers found that magnetotactic bacteria can be either North-bound or South-seeking. Hence, depending on whether the bacterium lives in the northern or southern hemisphere, it will swim towards the North- or the South pole. </p>



<p class="wp-block-paragraph">So, next time you want to hitchhike on a magnetotactic bacterium, ask it first where it is going!</p>



<h2 class="wp-block-heading">Why do magnetotactic bacteria sense magnetic field lines?</h2>



<p class="wp-block-paragraph">Researchers do not have a clear answer to this one yet.</p>



<p class="wp-block-paragraph">One hypothesis is that within the depth of the water, a bacterium has three dimensions to align to, swim to and explore. By aligning the bacterium to the Earth&#8217;s magnetic field, the bacterium only moves in one dimension. This makes the search for the perfect location easier. Otherwise, bacteria might swim aimlessly in all three dimensions and get lost.</p>



<p class="wp-block-paragraph">Also, most magnetotactic bacteria are <a href="https://sarahs-world.blog/chemotaxis-helps-bacteria/">chemotactic</a> and even aerotactic. This means they move towards oxygen &#8211; again to find the perfect spot to live and to find nutrients.</p>



<p class="wp-block-paragraph">And some magnetotactic bacteria are even phototactic and&nbsp;<a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1111/1462-2920.14710" target="_blank" rel="noreferrer noopener">swim away from blue light</a>. Researchers think that because blue wavelengths are a sign of deep water, bacteria are trying to avoid going too deep. But this still needs some more research.</p>



<h2 class="wp-block-heading">Do magnetotactic bacteria help other organisms?</h2>



<p class="wp-block-paragraph">Researchers found an amazing example of a symbiotic relationship in the <a href="https://sarahs-world.blog/category/the-microbial-world/">microbial world</a>.</p>



<p class="wp-block-paragraph">They discovered magnetotactic bacteria that <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1038/s41564-019-0432-7" target="_blank" rel="noreferrer noopener">live on a eukaryotic protist</a>. The two species exchange metabolic molecules, so they feed each other.</p>



<p class="wp-block-paragraph">What I find really fascinating is that these two species together become a swimming magnetic superorganism. The researchers saw that the magnetotactic bacteria completely cover the surface of the protist. And because the magnetotactic bacteria have magnetosomes, they align with the magnetic field. Thus, the entirety of bacteria on the protist aligns the whole protist with the magnetic field.&nbsp;</p>



<p class="wp-block-paragraph">Interestingly, this species of magnetotactic bacteria lost their flagella during evolution. So they are unable to swim. But the protist still has a swimming rotor. Thus, because of the symbiosis, this multi-organism is able to sense and swim along the magnetic field lines.&nbsp;</p>



<h2 class="wp-block-heading">Magnetotaxis &#8211; a bacterial superpower</h2>



<p class="wp-block-paragraph">Okay, I hope I could convince you yet again how amazing bacteria are and that they do have <a href="https://sarahs-world.blog/bacterial-superpowers/">superpowers</a>. </p>



<p class="wp-block-paragraph">Again, it is not a hundred percent clear yet, how sensing magnetic field lines help bacteria to survive. But as usual with evolution, if some species kept such an impressive superpower, it must have a big advantage.&nbsp;</p>



<p class="wp-block-paragraph">We just don&#8217;t understand it yet.</p>
<p>The post <a href="https://sarahs-world.blog/magnetotactic-bacteria/">How bacteria read and follow the Earth&#8217;s magnetic field</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
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		<title>Bacteria breaking free from home</title>
		<link>https://sarahs-world.blog/bacteria-breaking-free-from-home/</link>
					<comments>https://sarahs-world.blog/bacteria-breaking-free-from-home/#respond</comments>
		
		<dc:creator><![CDATA[Sarah]]></dc:creator>
		<pubDate>Mon, 16 Dec 2019 13:59:36 +0000</pubDate>
				<category><![CDATA[Bacteria and their environment]]></category>
		<category><![CDATA[Antimicrobial resistance]]></category>
		<category><![CDATA[Bacterial movement]]></category>
		<category><![CDATA[Biofilms]]></category>
		<category><![CDATA[Health]]></category>
		<category><![CDATA[Microbial communities]]></category>
		<guid isPermaLink="false">https://sarahs-world.blog/?p=511</guid>

					<description><![CDATA[<p>To protect themselves from the environment, bacteria build shielding biofilms houses. But once such a house gets old, bacteria need to break out it. For that, bacteria produce special scissors that can break biofilms and set free the bacteria.</p>
<p>The post <a href="https://sarahs-world.blog/bacteria-breaking-free-from-home/">Bacteria breaking free from home</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
]]></description>
										<content:encoded><![CDATA[
<p class="wp-block-paragraph">To protect themselves from harsh environments, <a href="https://sarahs-world.blog/bacteria-building-houses/" target="_blank" rel="noreferrer noopener">bacteria build shielding biofilm houses</a>. After a while, such a <a href="https://sarahs-world.blog/tag/biofilm/" target="_blank" rel="noreferrer noopener">biofilm </a>house becomes old and crumbling. This is when bacteria need to break their biofilms to free themselves from them. </p>



<p class="wp-block-paragraph">And this process is very interesting to researchers. It tells them how bacteria move in the environment, advance their populations and evolve in general. So, here we explain one mechanism of how bacteria break biofilms. </p>



<h2 class="wp-block-heading">The bacterium <em>Desulfovibrius vulgaris</em> likes water pipes</h2>



<p class="wp-block-paragraph">As you might know, bacteria are basically everywhere. And they like to build their biofilm houses on pretty much any surface they can find. Be it in or on our <a href="https://sarahs-world.blog/tag/human-body/" target="_blank" rel="noreferrer noopener">bodies</a> or somewhere in nature and the <a href="https://sarahs-world.blog/category/bacteria-in-the-environment/" target="_blank" rel="noreferrer noopener">environment</a>.</p>



<p class="wp-block-paragraph">For example, the bacterium <em>Desulfovibrio vulgari</em>s likes to live on metallic surfaces in the soil. These could be water systems or pipelines that are wet and warm.</p>



<p class="wp-block-paragraph">Here, the bacterium builds its biofilm house to be protected from the surrounding. Now, <em>Desulfovibrio vulgari</em>s <a href="https://sarahs-world.blog/bacterial-respiration-gains-energy/">can use the metal from the pipe to gain energy</a>, so it &#8220;breathes&#8221; the metal. But this metabolic activity leads to the metal pipes corroding or rusting. </p>



<p class="wp-block-paragraph">And when these metal pipes start corroding, they stop functioning properly which can lead to some serious health issues. So, researchers decided to look into how these <a href="https://doi.org/10.1111/1462-2920.14883">bacteria build and break their biofilms</a>.</p>



<h2 class="wp-block-heading">Bacteria build and break biofilms</h2>



<p class="wp-block-paragraph">The researchers looked at the genes of <em>Desulfovibrio vulgaris </em>with bioinformatic tools. And they found some<a href="https://doi.org/10.1111/1462-2920.14064"> genes that the bacterium uses to produce less biofilm.</a> Researchers already know some of these genes from other bacteria. Here, these genes also prevented the bacteria from producing a lot of biofilm.</p>



<p class="wp-block-paragraph">So, the researchers decided on one of these genes and looked at them in more detail. They found that the gene produced a specific enzyme, which is a protein with a special activity. </p>



<p class="wp-block-paragraph">And in this case, the enzyme&#8217;s activity was that it works like a scissor and breaks the biofilms of <em>Desulfovibrio vulgaris.</em> But the researchers also found that this scissor can break the biofilms of other bacteria.</p>



<p class="wp-block-paragraph">Scientists have always tried to find some kinds of scissors in bacteria that can break biofilms. However, they usually focused on biofilms formed by bacteria in hospital settings. Now, they finally found a new pair of such scissors made by bacteria that live in the environment. </p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" src="https://sarahs-world.blog/wp-content/uploads/2019/12/20191215_153102-compressor-927x1024.jpg" alt="Bacteria like Desulfovibrio vulgaris produce scissors that cut the bacteria free from their biofilms." class="wp-image-977" width="462" height="511" srcset="https://sarahs-world.blog/wp-content/uploads/2019/12/20191215_153102-compressor-927x1024.jpg 927w, https://sarahs-world.blog/wp-content/uploads/2019/12/20191215_153102-compressor-272x300.jpg 272w, https://sarahs-world.blog/wp-content/uploads/2019/12/20191215_153102-compressor-768x848.jpg 768w, https://sarahs-world.blog/wp-content/uploads/2019/12/20191215_153102-compressor-1391x1536.jpg 1391w, https://sarahs-world.blog/wp-content/uploads/2019/12/20191215_153102-compressor-1855x2048.jpg 1855w, https://sarahs-world.blog/wp-content/uploads/2019/12/20191215_153102-compressor-scaled.jpg 924w" sizes="(max-width: 462px) 100vw, 462px" /><figcaption>&#8220;Bacteria break biofilms&#8221; by <a href="https://sarahs-world.blog/tag/sciart" target="_blank" rel="noreferrer noopener">Noémie Matthey.</a></figcaption></figure>



<h2 class="wp-block-heading">Why do bacteria produce scissors?</h2>



<p class="wp-block-paragraph">Do they not like living in their biofilm houses?</p>



<p class="wp-block-paragraph">To answer this question, we need to understand that the <a href="https://sarahs-world.blog/bacteria-building-houses/">bacterial biofilm </a>lifestyle works as a cycle. Bacteria build biofilms and use them as houses. As soon as nutrients are scarce or there are too many bacteria within a biofilm, some bacteria break the biofilms to cut themselves loose. </p>



<p class="wp-block-paragraph">For this, bacteria need to break down parts of their biofilm houses for which they use their special scissors. After cutting themselves free from the biofilm, they start swimming and looking for a new place to live. Once they found it, they will settle down and build a new biofilm house. </p>



<p class="wp-block-paragraph">By discovering these new kinds of scissors, scientists now have novel tools to combat bacterial biofilms. These tools could inhibit bacterial biofilms in many different settings like the environment or in hospitals.</p>
<p>The post <a href="https://sarahs-world.blog/bacteria-breaking-free-from-home/">Bacteria breaking free from home</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
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