And only thanks to pigments, life on Earth is possible. Pigments were the first molecules that microbes used to harvest sunlight. Microbes could then transform the light energy into chemical energy and produce oxygen.

Even the brown-reddish haemoglobin in your blood is an essential pigment as it transports oxygen within your body. Also for bacteria, pigments and their colours have life-saving functions. Here, we will look at how biopigments colour the bacterial world and what bacteria gain from producing them.

Bacterial pigments bring colour to the world of bacteria

Biopigments are molecules with complex chemical structures and at least one excited electron. Depending on the electron’s arrangement, a pigment absorbs light at a specific wavelength. It reflects the colour of the unabsorbed wavelength, which gives the pigment its colour.

As the function of pigments depends on the incoming light, sunlight plays a crucial role for bacteria with pigments. By adding certain pigments to their membrane, bacteria can adapt to environments that are directly affected by sunlight or the lack of it. This gives them an advantage over those bacteria that lack these pigments.

However, some bacteria also use pigments for other purposes, which we discuss further in this article.

Microbes harness photosynthetic power with colourful pigments

Sunlight is incredibly powerful since each light photon contains energy. Bacteria adapted to harvest energy from sunlight with special pigments.

Pigments can capture the incoming photon and transfer its energy to other molecules. This process transforms the incoming light energy into chemical energy. So-called phototrophic microbes are those that gain their energy from light.

The best-known example of a photosynthetic biopigment is chlorophyll in plants, algae and cyanobacteria. Cyanobacteria produce several complexes of bacteriochlorophylls to absorb blue and red light. As the green light is not absorbed, it is reflected, which is why chlorophyll – and thus cyanobacteria, algae and plants – are green.

Some bacteria harvest more light by producing several pigments of different types. They then arrange them in an optimal formation according to the incoming light.

For example, carotenoids capture energy in the green-blueish range and pass it on to the associated chlorophyll. Together, these photosynthetic complexes absorb light energy from almost the entire wavelength spectrum.

Halophilic bacteria and archaea are microbes that produce carotenoids to capture sunlight. You may have seen salt ponds with a reddish colour. This comes from the red and pink-coloured archaea Halobacteria, bacteria Salinibacter or algae Dunaliella. Thanks to their colourful carotenoids, these microbes adapt to salty waters that are exposed to direct sunlight.

Cyanobacteria in the deep sea, lagoons, lakes, ponds or rivers produce similar molecules to chlorophyll. These absorb the blue-green light in water, which allows these bacteria to survive in these dark environments. If you have ever seen a lagoon shining yellow or orange, this was probably due to the colourful cyanobacteria inside.

Bacterial biopigments protect from too much light

As light is full of energy, bacteria also need to protect themselves from getting burned. For this, they produce pigments that take up the excess light energy. Like this, the main photosynthetic complex does not get damaged.

Carotenoids and xanthomonadins are the colourful sun blockers of the microbial world. These molecules absorb high-energy light to protect chlorophyll from damage. Over 600 different carotenoids were described and they usually come in yellow-orange-reddish colours.

The yellow xanthomonadins absorb wavelengths within the energy-rich UV spectrum. Bacteria like Xanthomonas campestris live on plant leaves where they are exposed to direct sunlight. Hence, their yellow xanthomonadin coats are like self-made sunblocks protecting the bacteria.

Also, the pigment melanin shields the producing cell from energy-rich sunlight. Many bacteria living in the soil or bacterial spores produce these pigments. Here, melanin absorbs light from a wide range of the light spectrum to protect the inner of the cell. Hence, melanin-producing bacteria, like Vibrio cholerae and Streptomyces bacteria, are brown or black.

Bacterial pigments let electrons flow and save energy

Since bacterial pigments allow electrons to flow, they can also be energy conductors. Hence, some pigments are important components of energy complexes and synthesis machineries.

For example, yellow flavins are pigments involved in cellular metabolism. The main flavin is riboflavin, which you may know as vitamin B12. This essential molecule – produced only by bacteria – allows our bodies to work.

Phenazines are unique bacterial pigments with yellowish-green fluorescent colours. Pyocyanin, exclusively produced by Pseudomonas bacteria, shuttles electrons – and thus energy – during the respiration process. Hence, pyocyanin is essential for Pseudomonas as it keeps the bacteria healthy and alive.

Some biopigments have anti-oxidant effects

Bacterial pigments don’t just help adapt to external environmental conditions like the sunlight. They also guard the inner bacterial cell from stressful situations.

Excess or uncaptured energy or escaped light photons can react with oxygen. This process produces so-called oxygen radicals, which can damage molecules inside the bacterium. Known as oxidative stress, oxygen radicals can even become life-threatening for bacteria.

Carotenoids and xanthomonadins protect bacterial cells from oxidative stress. These pigments transform the free oxygen radicals into harmless molecules. Since carotenoids and their product vitamin A have similar functions in humans, it is only healthy for us to take up a lot of these with our diet.

In the bacterium Gemmatimonas aurantiaca, orange carotenoids also work like sunscreen and oxidative shield. These pigments both give the bacterium its bright orange colour and protect it from too much sunlight.

Bacteria combat microbial enemies with coloured pigments

As night falls, many bacterial pigments reveal their darker sides. They become important weapons for microbial warfare. Without sunlight, several pigments take on roles as virulence factors and antimicrobials as they mess up cells’ energy and oxygen household.

For example, prodigiosin is the red weapon of Serratia marcescens. As prodigiosin inhibits the growth of several bacterial, fungal and insecticidal pathogens, Serratia marcescens is an important biocontrol bacterium of plant disease.

You may have seen prodigiosin-producing Serratia bacteria on contaminated food. They develop these red, blood-like dots.

Violacein is a purple pigment with anti-viral, anti-bacterial and anti-cancer properties. For example, Chromobacterium violaceum sends membrane bubbles filled with violacein to kill bacterial enemies.

Similarly, Janthinobacterium lividum protects frogs and salamanders as it lives on their skins. Here, the bacterium throws violacein at pathogenic fungi that would otherwise infect and harm the animals.

Pyocyanin, the fluorescent electron-shuttling pigment in Pseudomonas, is also very sensitive to oxygen. It even turns Pseudomonas aeruginosa cultures in the lab blueish just by shaking and airing them.

Yet, not all bacteria have an appropriate coping mechanism for pyocyanin. Hence, these bacteria suffer oxidative stress when they come into contact with this pigment. This is why Pseudomonas uses pyocyanin also to fight bacterial and fungal enemies.

Vivid pigments colour the bacterial world

The Bacterial World is colourful – one of this blog’s taglines. You may have asked yourself what this is about and why bacteria have so many different colours.

From the dazzling pink of halophilic microorganisms to the sunny yellow of phytopathogens, bacterial pigments give their producers shiny and vibrant colours. But thanks to the colourful biopigments, bacteria also gain abilities to survive in new and challenging environments.

Some of these bacterial pigments are essential for us humans and even life on Earth. From some of these colourful biopigments, we produce vitamins that we need for our own metabolism. Also, every oxygen molecule that you just took up with your last breath, at some point, was transformed by a bacterial chlorophyll pigment.

So, I guess it is yet again time to be grateful to bacteria and their vibrant and life-enabling activities!

The post Creating the colours of the rainbow: Bacteria and the vibrant world of pigments appeared first on Bacterialworld.
Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world

Some microbes come to make their hosts sick. Other microbes are there to help and protect them.

This is a story of both types of microbes and an unusual host: amphibians.

Yes, also frogs and salamanders and other amphibians carry microbes on their skins.

And some of these microbes mean to kill the animals. But, luckily, the animals are protected by helpful bacteria that produce colourful antibiotics.

Read on to find out how bacteria and fungi do not get along on the skin of amphibians. We will also explore how bacteria protect amphibians from extinction.

About fungi that infect the skins of their hosts

Many frogs, salamanders and other amphibians have gone extinct because of a deadly fungal infection. And it seems that many more animals are already infected and sick from that same pathogen.

The bad guys? The two fungal species Batrachochytrium dendrobatidis and Batrachochytrium salamandrivorans. They cause a deadly skin disease on frogs and other exotic amphibians.

Similarly, the fungus Trichophyton rubrum can infect our skin and hair. This pathogen causes a disease that you may know as ringworm or athlete’s foot. Typically, you can see such a fungal infection as a red, itchy and circular rash.

But luckily there is a new weapon around to keep these fungal intruders at bay: Bacteria that get rid of the fungus to protect their hosts.

Bacteria produce colourful antibiotics…

Few microbes can grow and thrive on the gloomy skin of frogs or salamanders. One such microbe is the bacterium Janthinobacterium lividum.

This bacterium has an interesting taste for food. It eats the released skin when the amphibians shed their skin. And it also really likes the mucus on the surface of the amphibians.

As a thank you for the good meal, the bacteria help the amphibians in the fight against the deadly fungus.

How?

Generally, bacteria produce antibiotics to get rid of annoying competitors. For example, Janthinobacterium produces the antibiotic violacein, which has a dark violet colour. This antibiotic also kills the fungi that make the frogs sick.

It is still unclear to researchers, how Janthinobacterium transports the antibiotic to the fungus. We already know that the bacterium Chromobacterium violaceum produces membrane bubbles filled with violacein. And that it throws these purple bubbles at its competitors. So, one idea is that Janthinobacterium uses a similar strategy and throws violacein bubbles at the fungus.

Also, when Janthinobacterium grows on the skin of frogs, it triggers the frog to produce more anti-fungal molecules. These molecules kill the fungus and other pathogenic bacteria that are dangerous to the frog.

… and protect them from deadly fungi

Janthinobacterium is not the only bacterium that produces colourful antibiotics to protect its host.

You might have seen red dots in your shower every once in a while. These come from the bacterium Serratia marcescens which makes a red antibiotic. Interestingly, this bacterium can also live on the skins of amphibians. And here, the red antibiotic also protects from deadly fungi.

Other bacteria, like allrounder Pseudomonas, also live on the skins of some amphibians. And these bacteria produce many different antifungals to protect their hosts.

Hence, it looks as if the right skin bacteria protect frogs and salamanders from deadly fungi. And these bacteria keep throwing around colourful bubbles filled with antibiotics – sounds like a bacterial festival to celebrate their hosts?

Colourful bacterial antibiotics to save amphibians?

Now, researchers are trying to save amphibians from the deadly fungus with a process called bioaugmentation. With this strategy, researchers introduce special bacterial communities to the environment. And they hope that the bacteria will jump over to different amphibians.

Bacteria like Janthinobacterium then hopefully establish stable communities on the skins of amphibians and protect them from fungal infections. And let’s hope that these bacterial parties will save more frog species from extinction!

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Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world

Yes, bubbles!

No, bacteria don’t just produce bubbles and try to hit another microbe with them. They are more sneaky. Bacteria fill these bubbles with antibiotics. And antibiotics are toxic and kill microbes.

So, when these toxic bubbles hit other bacteria, they will suffer.

Let’s look at where these bubbles come from and why bacteria decide to fill them with antibiotics.

Bacteria and their membrane(s)

Bacteria come in one of two kinds. They can have one or two cell membranes.

If a bacterium has one cell membrane, it is called Gram-positive. If it has two cell membranes, an inner and an outer membrane, it belongs to the Gram-negative bacteria. 

The outer and inner membranes of Gram-negative bacteria are slightly different. Interestingly, the inner membrane of Gram-negative bacteria is the same as the cell membrane of Gram-positive bacteria. But in Gram-positive bacteria, that membrane has a lot of additional stuff to make it thicker.

Because Gram-negative bacteria have two membranes, their outer membranes can form “blebs”. These blebs, also called vesicles, eventually form round spheres – or bubbles – and detach from the membrane which is how they are released into the environment.

Bacteria and their outer membrane bubbles

As you can see, these bubbles are made from the outer membrane of Gram-negative bacteria. This is why they are called outer membrane vesicles. These are basically a double layer of lipids in the form of a sphere with stuff inside. 

Within these bubbles, bacteria pack anything that they want to get rid of. This can be cell junk and can come from cell machines that don’t work anymore. Bacteria can get rid of that stuff by throwing it out.

About Chromobacterium violaceum

One bacterium that produces these outer membrane vesicles is Chromobacterium violaceum. And this one has a special reason to produce bubbles: it uses them to kill other bacteria.

Chromobacterium violaceum produces the antibiotic violacein. Violacein is a purple molecule and turns Chromobacterium colonies into purple dots. 

Since violacein is an antibiotic, it kills other bacteria. However, this antibiotic only kills Gram-positive bacteria, those with only one cell membrane.

The problem with violacein is, that it is a very hydrophobic molecule. This means that it is insoluble in water. Hence, researchers were interested to find out how Chromobacterium transports violacein through water to other bacteria. 

Chromobacterium violaceum bacteria produce toxic bubbles

So, researchers had a look at Chromobacterium cells. They saw that these bacteria produce bubbles from their outer membrane. And they do indeed look like spikey bubbles as in the picture below.

The researchers then purified the vesicles and added them to Staphylococcus aureus, a Gram-positive bacterium. The vesicles killed Staphylococcus aureus, hence the researchers thought that the violacein would be inside these vesicles.

Then they grew a Chromobacterium mutant that did not produce any violacein. But this mutant still produced outer membrane vesicles. Surprisingly, the vesicles from this mutant did not kill Staphylococcus aureus. 

From this, the researchers concluded that Chromobacterium transports the violacein within the bubbles.

This meant that the researchers found new functions for outer membrane vesicles. Hence, bacteria use them

a) to solubilise a hydrophobic molecule

b) to transport a hydrophobic and toxic molecule towards other bacteria

c) as bacterial weapons

Now, this concept gives researchers interesting possibilities to apply outer membrane vesicles.

Maybe, one day we will find a way to fill these bubbles with therapeutic molecules and send them towards tumour cells or we just found a new way to deliver antimicrobial substances in general.

For sure, scientists will come up with some cool new ideas to use outer membrane vesicles in the clinic, but as always, that requires a lot more research ?

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Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world