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	<title>Kanika Khanna Archives - Bacterialworld</title>
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	<title>Kanika Khanna Archives - Bacterialworld</title>
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		<title>Sporulation in Bacillus subtilis: A strategy for bacterial hibernation</title>
		<link>https://sarahs-world.blog/bacterial-sporulation/</link>
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		<dc:creator><![CDATA[Sarah]]></dc:creator>
		<pubDate>Sat, 18 Jul 2020 12:09:00 +0000</pubDate>
				<category><![CDATA[Bacterial growth]]></category>
		<category><![CDATA[Bacterial superpowers]]></category>
		<category><![CDATA[Bacterial membrane]]></category>
		<category><![CDATA[Bacterial stress response]]></category>
		<category><![CDATA[Health]]></category>
		<category><![CDATA[Physiology]]></category>
		<category><![CDATA[Quorum sensing]]></category>
		<category><![CDATA[Sporulation]]></category>
		<guid isPermaLink="false">https://sarahs-world.blog/?p=2092</guid>

					<description><![CDATA[<p>When bacteria run out of nutrients, they start a process called sporulation to preserve their genetic material.<br />
This article explores what a bacterial spore is and looks at the details of the sporulation process.</p>
<p>The post <a href="https://sarahs-world.blog/bacterial-sporulation/">Sporulation in Bacillus subtilis: A strategy for bacterial hibernation</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
]]></description>
										<content:encoded><![CDATA[
<p class="wp-block-paragraph"><em>I am Kanika (<a href="https://twitter.com/khannakanika111">@khannakanika111</a>), a former graduate student with Prof. Kit Pogliano and Prof. Elizabeth Villa at UCSD. During my PhD, I studied tiny molecular machineries that are involved in bacterial sporulation using high-resolution imaging methods in cryo-electron microscopy. </em> </p>



<div class="wp-block-group is-layout-flow wp-block-group-is-layout-flow">
<p class="wp-block-paragraph">You probably know that many mammals, reptiles and insects hibernate or go on a long sleep to escape the harsh weather and food scarcity. Hibernation habits can differ depending on the animal. But, essentially, hibernation slows down the organism’s metabolism, heartbeat and body temperature to save energy. </p>



<p class="wp-block-paragraph">Remarkably, even individual cells, like bacteria, have come up with ways to <a href="https://sarahs-world.blog/salmonella-stress/">save energy when food is limited</a>. For instance, many bacterial species of <em>Bacillus</em> and <em>Clostridium</em> have evolved a specialized strategy called <strong>sporulation </strong><a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1111/1758-2229.12130" target="_blank" rel="noreferrer noopener">to survive starvation</a>.</p>



<p class="wp-block-paragraph">In this article, I will explain what sporulation is and why and when bacteria decide to sporulate.</p>
</div>



<h2 class="wp-block-heading">What is bacterial sporulation?</h2>



<p class="wp-block-paragraph">When a bacterium sporulates, it transforms from a rod-shaped bacterial cell (4-10 μm long) to a round, spherical spore (1-1.5 μm long). </p>



<figure class="wp-block-image aligncenter is-resized"><img fetchpriority="high" decoding="async" width="1024" height="605" src="https://sarahs-world.blog/wp-content/uploads/Bacillus-subtilis-spore-1024x605.png" alt="A bacterial spore consists of a core DNA, a thick peptidoglycan layer and an innner and outer coat." class="wp-image-2106" style="width:495px;height:292px" srcset="https://sarahs-world.blog/wp-content/uploads/Bacillus-subtilis-spore-1024x605.png 1024w, https://sarahs-world.blog/wp-content/uploads/Bacillus-subtilis-spore-300x177.png 300w, https://sarahs-world.blog/wp-content/uploads/Bacillus-subtilis-spore-768x454.png 768w, https://sarahs-world.blog/wp-content/uploads/Bacillus-subtilis-spore-1536x908.png 1536w, https://sarahs-world.blog/wp-content/uploads/Bacillus-subtilis-spore.png 1563w" sizes="(max-width: 1024px) 100vw, 1024px" /><figcaption class="wp-element-caption">Cryo-electron tomogram of a <em>Bacillus subtilis</em> spore. Figure adapted from <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1146/annurev-micro-022520-074650" target="_blank" rel="noreferrer noopener">Khanna<em> et al</em>., 2020</a>. </figcaption></figure>



<p class="wp-block-paragraph">Bacterial spores are surrounded by thick layers of cell wall material or peptidoglycan and many layers of proteins. These make the spore highly resilient and shield it from all kinds of environmental assaults, including UV radiation, desiccation and antibiotics. Within the spore, it protects the genetic material of the parent bacterium. </p>



<p class="wp-block-paragraph">Now the spore is metabolically dormant. This means that the cell has stopped all activities which require energy, like growth and development. </p>



<figure class="wp-block-image aligncenter size-large is-resized"><img decoding="async" width="791" height="1024" src="https://sarahs-world.blog/wp-content/uploads/B_bacillus-subtilis-791x1024.png" alt="" class="wp-image-4666" style="width:584px;height:756px" srcset="https://sarahs-world.blog/wp-content/uploads/B_bacillus-subtilis-791x1024.png 791w, https://sarahs-world.blog/wp-content/uploads/B_bacillus-subtilis-232x300.png 232w, https://sarahs-world.blog/wp-content/uploads/B_bacillus-subtilis-768x994.png 768w, https://sarahs-world.blog/wp-content/uploads/B_bacillus-subtilis-1187x1536.png 1187w, https://sarahs-world.blog/wp-content/uploads/B_bacillus-subtilis-1583x2048.png 1583w" sizes="(max-width: 791px) 100vw, 791px" /><figcaption class="wp-element-caption"><em>Bacillus subtilis</em> is a master of sporulation.</figcaption></figure>



<div class="wp-block-buttons is-content-justification-center is-layout-flex wp-container-core-buttons-is-layout-3e41869c wp-block-buttons-is-layout-flex">
<div class="wp-block-button has-custom-font-size is-style-fill has-medium-font-size"><a class="wp-block-button__link has-vivid-purple-background-color has-text-color has-background has-text-align-center wp-element-button" href="https://sarahs-world.blog/coloured-bacteria-from-a-to-z/" style="color:#f9d46d" target="_blank" rel="noreferrer noopener"><strong>Learn more about <em>Bacillus subtilis</em> in our colouring book.</strong></a></div>
</div>



<p class="wp-block-paragraph"></p>



<p class="wp-block-paragraph">Spores can remain stable for extremely long periods of time. In fact, researchers found <em>Bacillus</em> spores dating back almost 25 million years in the <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1126/science.7538699" target="_blank" rel="noreferrer noopener">abdomen of extinct bees preserved in Dominican amber</a>. Other samples date <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1038/35038060" target="_blank" rel="noreferrer noopener">back 250 million years from salt crystals</a>.</p>



<h2 class="wp-block-heading">Why study sporulation?</h2>



<p class="wp-block-paragraph">To date, most studies aim to understand sporulation in the model bacterium <em>Bacillus subtilis</em>. <em>Bacillus subtilis</em> is a Gram-positive bacterium with a thick layer of peptidoglycan outside the cellular membrane. </p>



<p class="wp-block-paragraph">One of the major reasons why is it relatively easy to study sporulation in <em>Bacillus subtilis</em> is its natural ability to take up foreign DNA and integrate it into its genome. This provides scientists with a wide range of tools for gene editing in <em>Bacillus subtilis</em>. And they can study the functions of different molecules in space and time during sporulation.</p>



<figure class="wp-block-image aligncenter size-full is-resized"><img decoding="async" width="640" height="986" src="https://sarahs-world.blog/wp-content/uploads/spore-development-Koch.jpg" alt="Koch’s drawings of Bacillus anthracis during different stages of sporulation. Ferdinand Cohn and Robert Koch first discovered the formation and germination of endospores of Bacillus in the late 1870s." class="wp-image-2107" style="width:480px;height:740px" srcset="https://sarahs-world.blog/wp-content/uploads/spore-development-Koch.jpg 640w, https://sarahs-world.blog/wp-content/uploads/spore-development-Koch-195x300.jpg 195w" sizes="(max-width: 640px) 100vw, 640px" /><figcaption class="wp-element-caption">Koch’s drawings of <em>Bacillus anthracis</em> during different stages of spore development. Ferdinand Cohn and Robert Koch first discovered the formation and germination of endospores of <em>Bacillus</em> in the late 1870s. Adapted from <a href="http://dx.doi.org/10.25646/5064">Koch, 1876</a>. </figcaption></figure>



<p class="wp-block-paragraph">Some bacterial spore-formers can also be pathogenic in a human or animal host. </p>



<p class="wp-block-paragraph">Examples include <em>Bacillus anthracis</em> (the causative agent of anthrax), <em>Clostridium difficile</em> (implicated in colon disease) and <em>Clostridiumm botulinum</em> (implicated in food poisoning). Spores of these pathogenic bacteria can secretly survive inside the host due to their ability to withstand harsh environments. But once they get access to nutrients, they germinate again and become viable bacteria. These bacteria can then release lethal toxins to cause diseases in their respective hosts. </p>



<p class="wp-block-paragraph">There is some good news for the food lovers too though! Spores of a strain of <em>Bacillus subtilis</em>, <em>Bacillus subtilis</em> (natto) are used to ferment soybeans in a traditional Japanese dish called natto. The critical process in natto preparation is the germination of spores which then use nutrients from the soybeans to ferment them. The dish with its powerful smell and flavor is definitely for the bold!</p>



<h2 class="wp-block-heading">How does sporulation work?</h2>



<p class="wp-block-paragraph">Normally, a bacterial cell divides in the middle to produce two identical daughter cells. Researchers call this process binary fission or vegetative growth. </p>



<p class="wp-block-paragraph">But when a bacterium sporulates, the cell divides closer to one end of the cell, near a pole. This leads to the formation of two daughter cells of different sizes. The smaller cell is the <strong>forespore </strong>and the larger cell is the <strong>mother cell.</strong></p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" width="1024" height="988" src="https://sarahs-world.blog/wp-content/uploads/sporulation-pathway-1024x988.png" alt="Sporulation pathway in Bacillus subtilis." class="wp-image-2108" style="width:512px;height:494px" srcset="https://sarahs-world.blog/wp-content/uploads/sporulation-pathway-1024x988.png 1024w, https://sarahs-world.blog/wp-content/uploads/sporulation-pathway-300x290.png 300w, https://sarahs-world.blog/wp-content/uploads/sporulation-pathway-768x741.png 768w, https://sarahs-world.blog/wp-content/uploads/sporulation-pathway-1536x1483.png 1536w, https://sarahs-world.blog/wp-content/uploads/sporulation-pathway-2048x1977.png 2048w, https://sarahs-world.blog/wp-content/uploads/sporulation-pathway.png 957w" sizes="(max-width: 1024px) 100vw, 1024px" /><figcaption class="wp-element-caption">Sporulation pathway in <em>Bacillus subtilis</em>. Adapted from <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1146/annurev-micro-022520-074650" target="_blank" rel="noreferrer noopener">Khanna <em>et al.,</em> 2020</a>.</figcaption></figure>



<p class="wp-block-paragraph">The two cells are separated by a wall made by the invagination of the cell membrane and the peptidoglycan. This wall is the <strong>septum</strong>. </p>



<h3 class="wp-block-heading">Cell division leads to separation between spore and mother cell</h3>



<p class="wp-block-paragraph">Surprisingly, the wall separating the two daughter cells <a href="https://doi.org/10.1128/jb.173.10.3159-3169.1991" target="_blank" rel="noreferrer noopener">is almost four times thinner </a>during sporulation than during vegetative growth (~22 nm vs ~80 nm). </p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" width="1024" height="847" src="https://sarahs-world.blog/wp-content/uploads/chromosome-translocation-1024x847.png" alt="During sporulation, the dividing septum is thinner than during vegetative cell division." class="wp-image-2109" style="width:512px;height:424px" srcset="https://sarahs-world.blog/wp-content/uploads/chromosome-translocation-1024x847.png 1024w, https://sarahs-world.blog/wp-content/uploads/chromosome-translocation-300x248.png 300w, https://sarahs-world.blog/wp-content/uploads/chromosome-translocation-768x635.png 768w, https://sarahs-world.blog/wp-content/uploads/chromosome-translocation.png 1109w" sizes="(max-width: 1024px) 100vw, 1024px" /><figcaption class="wp-element-caption">Thickness of division septum during vegetative growth and sporulation. </figcaption></figure>



<p class="wp-block-paragraph">Scientists have always wondered why the cell would need a thinner septum during sporulation. One reason can be that the forespore and the mother cell need to communicate with each other and exchange certain metabolites. A thinner septum can make this a lot easier because channels don&#8217;t have to go through a thick wall. </p>



<p class="wp-block-paragraph">Another reason could be that the thinner septum is likely more flexible and easier to bend and stretch. Hence, the mother cell can move forward to engulf the forespore so that it is completely inside the mother cell.</p>



<h3 class="wp-block-heading">Transporting DNA into the spore</h3>



<p class="wp-block-paragraph">When a bacterial cell divides vegetatively, it splits the bacterial DNA equally into two daughter cells.&nbsp; But an interesting phenomenon occurs during sporulation. </p>



<p class="wp-block-paragraph">The DNA is <a aria-label="undefined (opens in a new tab)" href="http://doi.org/10.1126/science.8160014" target="_blank" rel="noreferrer noopener">trapped at the septum</a> such that the forespore has only 1/3<sup>rd</sup> of the DNA and the remaining 2/3<sup>rd</sup> stays in the mother cell. A <a aria-label="undefined (opens in a new tab)" href="http://doi.org/10.1126/science.290.5493.995" target="_blank" rel="noreferrer noopener">transporter then pumps the rest of the DNA </a>from the mother cell to the forespore. </p>



<p class="wp-block-paragraph">Packing the whole DNA into the small volume of the forespore probably increases the turgor pressure in the forespore. Hence, the <a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1016/j.cell.2018.01.027" target="_blank" rel="noreferrer noopener">forespore inflates like air in a balloon</a> to give it an ovoid shape.</p>



<figure class="wp-block-image aligncenter size-large is-resized"><img loading="lazy" decoding="async" width="461" height="1024" src="https://sarahs-world.blog/wp-content/uploads/engulfment-model-461x1024.png" alt="Chromosome translocation during B. subtilis sporulation." class="wp-image-2110" style="width:346px;height:768px" srcset="https://sarahs-world.blog/wp-content/uploads/engulfment-model-461x1024.png 461w, https://sarahs-world.blog/wp-content/uploads/engulfment-model-135x300.png 135w, https://sarahs-world.blog/wp-content/uploads/engulfment-model.png 567w" sizes="(max-width: 461px) 100vw, 461px" /><figcaption class="wp-element-caption">Chromosome translocation during <em>Bacillus subtilis</em> sporulation.</figcaption></figure>



<h3 class="wp-block-heading">Bringing the spore inside the mother cell</h3>



<p class="wp-block-paragraph">A critical process during endospore formation is when the mother cell engulfs the forespore. This means that instead of lying side by side, the forespore is now within the mother cell. </p>



<p class="wp-block-paragraph">To engulf the forespore, the mother cell has to overcome two barriers: </p>



<p class="wp-block-paragraph">(1) the peptidoglycan that surrounds the bacterial cell on the outside (shown by blue circles in the figure below), and </p>



<p class="wp-block-paragraph">(2) the septum (also peptidoglycan) that separates the two cells (shown by green circles in the figure below). </p>



<figure class="wp-block-image aligncenter size-full is-resized"><img loading="lazy" decoding="async" width="910" height="286" src="https://sarahs-world.blog/wp-content/uploads/peptidoglycan-during-sporulation.jpg" alt="Engulfment model based on coordination between cell wall insertion (orange arrow, 1) and cell wall degradation (black cross, 2) and makes room for movement of mother cell membrane forward" class="wp-image-2122" style="width:683px;height:215px" srcset="https://sarahs-world.blog/wp-content/uploads/peptidoglycan-during-sporulation.jpg 910w, https://sarahs-world.blog/wp-content/uploads/peptidoglycan-during-sporulation-300x94.jpg 300w, https://sarahs-world.blog/wp-content/uploads/peptidoglycan-during-sporulation-768x241.jpg 768w" sizes="(max-width: 910px) 100vw, 910px" /><figcaption class="wp-element-caption">Engulfment model based on coordination between cell wall insertion (orange arrow, 1) and cell wall degradation (black cross, 2). This makes room for movement of the mother cell membrane. Adapted from <a href="http://doi.org/10.7554/eLife.18657">Ojkic et al., 2016</a>.</figcaption></figure>



<p class="wp-block-paragraph">But the septum and the bacterial cell envelope are also connected. At this so-called leading-edge the two peptidoglycan structures meet. Here, critical activity happens. </p>



<p class="wp-block-paragraph">First, enzymes within the forespore (denoted by &#8216;1&#8217; in the figure) make a new bond with the cell wall ahead of the leading edge. With a new bond between the two, the old bond is no longer needed. Thus, enzymes in the mother cell break this old bond (denoted by &#8216;2&#8217; in the figure). </p>



<p class="wp-block-paragraph">Like this, the <a aria-label="undefined (opens in a new tab)" href="http://doi.org/10.7554/eLife.18657" target="_blank" rel="noreferrer noopener">mother cell can slowly move</a> around the spore until it completed warps around it.</p>



<h3 class="wp-block-heading">Wrapping the spore in a thick coat</h3>



<p class="wp-block-paragraph">Once the mother cell engulfed the forespore completely, the spore needs to mature. For this, the mother cell builds thick and protective layers around the spore to protect it from the environment. </p>



<p class="wp-block-paragraph">Ultimately, the mother cell lyses and dies and releases the mature spore into the environment. Only when the environmental conditions become favourable again, spores germinate and normal vegetative growth cycle starts again.&nbsp;</p>



<h2 class="wp-block-heading">Bacterial sporulation &#8211; a tightly regulated process</h2>



<p class="wp-block-paragraph">Although the process of sporulation sounds pretty simple, it can be extremely challenging to comprehend from the point of view of the bacterial cellular machinery. More than 500 genes are active only during sporulation. And these are not active during vegetative growth. </p>



<p class="wp-block-paragraph">Also, some genes are only active in the mother cell and others only active in the forespore. And each stage of spore formation needs to be tightly regulated!</p>



<p class="wp-block-paragraph">The studies of spore formation in <em>Bacillus subtilis</em> have undoubtedly increased our appreciation of what else bacteria are capable of. </p>



<p class="wp-block-paragraph">However, there are still many unanswered questions and unknown genes during sporulation that we need to study. </p>



<p class="wp-block-paragraph">Also, we need to expand these studies to understand sporulation in pathogenic spore-formers like <em>Clostridium difficile</em> and <em>Bacillus anthracis</em> so that we can develop treatments for these disease-causing organisms! </p>



<p class="wp-block-paragraph">Recent sequencing analysis of the <a aria-label="undefined (opens in a new tab)" href="https://sarahs-world.blog/category/our-microbiome/" target="_blank" rel="noreferrer noopener">human gut microbiota</a> also indicate that around 50-60% of bacteria in<a aria-label="undefined (opens in a new tab)" href="https://doi.org/10.1038/nature17645" target="_blank" rel="noreferrer noopener"> a healthy host intestine are spore-formers</a>. But we still don’t understand the functional and physiological relevance of the majority of them. </p>



<p class="wp-block-paragraph">There is definitely lots to explore and understand about this one-of-a-kind process of sporulation in bacteria!</p>
<p>The post <a href="https://sarahs-world.blog/bacterial-sporulation/">Sporulation in Bacillus subtilis: A strategy for bacterial hibernation</a> appeared first on <a href="https://sarahs-world.blog">Bacterialworld</a>.<br />
<a href="https://sarahs-world.blog">Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world</a></p>
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