They don’t have eyes to see what is going on.

Neither do they have ears to hear a foe approaching.

And yet they seem to know exactly what is happening around them.

How is that possible?

In other articles, we already looked at different mechanisms of how bacteria sense their environment. And we learned about various ways bacteria use to know what is going on around them.

Here, we will look at another one of these mechanisms. A mechanism in which bacteria destroy proteins to understand the environment and adapt to it.

But before we can look at why bacteria destroy proteins, we first need to understand how bacteria produce proteins.

Bacteria need proteins to produce proteins

Every living cell, like a bacterial cell or a human cell, contains DNA. And the DNA contains many different sections, which are genes. These genes are the templates for ALL proteins that a cell can produce.

A cellular machine called the polymerase (bright blue in the figure below) recognizes the start of a gene (yellow), before it transcribes this gene into a string of mRNA (grey). Next, a ribosome reads the mRNA fragment and translates it into a protein (yellow).

This is how every living cell produces proteins from DNA.

Now, we will focus on the first step: when the polymerase recognizes the start of a gene.

Bacteria need proteins to regulate protein production

When you think about it, bacteria do not always need all genes and all proteins. Just as you don’t need an umbrella when it is sunny outside, but it is always good to keep it handy. Similarly, bacteria have heaps of genes on that long string of DNA and they need some of them only under certain circumstances.

For this, all living cells have regulators. These regulators make sure that the polymerase only produces mRNA from genes that are required at a specific time point.

And these regulators come in two forms: activators and repressors.

Activators activate genes

Sometimes, the polymerase cannot recognize a specific gene on its own. This is when the polymerase needs an activator (green). 

An activator is a protein that binds to a specific gene only when needed. This attracts the polymerase to this gene so that it produces mRNA from that gene. Like that, an activator ensures that bacteria only produce certain proteins when needed.

This means something else needs to activate the activator at a specific time point. And while some activators are activated by specific systems as explained in How bacteria sense their environment, sometimes protein-destroying systems are involved. More about that below.

Repressors deactivate genes

Repressors (dark blue) do exactly the opposite of activators. These proteins bind specific genes right at the start. This blocks the polymerase from binding the start of that gene and from producing mRNA.

But when the bacterium needs a specific protein, the polymerase has to recognize and bind that specific gene. At that point, the bacterium has to get rid of the repressor.

So, let’s have a look at how bacteria gain access to genes that need activators or are blocked by repressors.

Bacteria destroy proteins to understand the environment

The environment constantly changes for a bacterium. So, all the time, a bacterium needs to produce certain proteins to handle these new situations. Just as you take your umbrella when it is raining suddenly.

This is when the bacterium needs the polymerase to recognize a specific gene to make mRNA from it.

To get rid of a repressor or to activate an activator when needed, bacteria came up with a simple mechanism: protein destruction.

Yes, to produce proteins, sometimes bacteria destroy proteins.

Proteins that destroy proteins are called proteases and these work like molecular scissors. Proteases cut proteins in at least one specific location. This makes the protein fall apart and become kaput. 

When do bacteria destroy proteins?

Different bacteria developed various mechanisms when to destroy specific proteins. And researchers start to understand more and more about this way of regulation.

So, let’s have a look at a few cool examples of bacteria destroying proteins.

Radiation leads to protein destruction and survival

For example, the fascinating bacterium Deinococcus deserti has genes to cope with radiation and desiccation. However, the bacterium does not need to produce these proteins when there is no radiation or desiccation.

Under these circumstances, the repressor D (dark blue in the figure below) blocks these genes and makes sure the polymerase cannot recognize them.

But as soon as the bacterium is hit with radiation (lightning), the radiation activates the protease M (red). This protease can now bind the repressor D and destroy it. Now, that the repressor does not block the radiation genes anymore, the polymerase can recognize the genes and produce mRNA from them. Now, the ribosome produces proteins (yellow) that cope with the radiation. 

And this is how the bacterium Deinococcus deserti destroys proteins to survive. And yes, this bacterium has the superpowers to withstand radiation and desiccation like no other bacterium.

Antibiotics lead to protein destruction and resistance

In another example, Staphylococcus aureus has a similar mechanism to cope with antibiotics and become resistant. 

In the membrane of this bacterium sits the protease R (red) that is generally inactive. However, when the bacterium meets antibiotics (green molecules), the antibiotics change R. 

Now, the protease falls into the inside of the bacterium and destroys its target protein. This is the repressor I (dark blue), which sits and blocks a certain gene. After protease R destroyed repressor I, this gene is unblocked and the bacterium produces a protein (yellow) that cleaves the antibiotic. 

And this is how Staphylococcus aureus becomes resistant to antibiotics by destroying proteins.

Heat leads to protein destruction and survival

But bacteria do not only destroy repressors. They also use a similar mechanism to activate their activators. 

Generally, to keep an activator inactive, another protein is involved. This is the so-called anti-activator since it captures the activator and inhibits it from functioning. So, for the activator to become active and to bind its specific gene, the anti-activator needs to go. And this is exactly what bacteria do.

For example, in the soil bacterium Bacillus subtilis, the anti-activator Y (dark blue) captures the activator S (green). Plus, Y brings S to the cellular garbage machine (purple) to destroy this protein.

However, as soon as it is getting too hot for the bacterium, Y becomes unstable. So unstable, that it cannot hold S anymore. This means S gets freed, binds its favorite genes and leads the polymerase to them. Now, the bacterium produces proteins (yellow) that help the bacterium to cope with the damage from the heat.

And this is how Bacillus subtilis destroys proteins to cope with heat.

Destroying proteins means bacteria can survive

Here we explored three different ways of how bacteria destroy proteins for their own benefit. Interestingly, the benefit always handles the incoming signal which is often a sign of stress.

Like in Deinococcus deserti, radiation activates protein destruction that leads to protein production. And these new proteins now handle the damage after the radiation attack.

Or in Staphylococcus aureus; antibiotics activate a specific protease that destroys a repressor. Now, the produced proteins are meant to destroy the harmful antibiotics.

So by closing these circles, bacteria found efficient ways of how to read their environment and adapt to it.

Interestingly, most bacteria seem to use similar mechanisms. This means, the better we understand the way most bacteria work, the better chances we have to fight the nasty ones. So we need to keep researching the good bacteria, to understand the bad guys too!

The post Bacteria destroy proteins to understand the environment appeared first on Bacterialworld.
Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world

Gladly, we learned to use some of these bacterial superpowers to improve our own lives. This means that bacteria and their superpowers are pretty much everywhere you look. You can find their impact in the food you eat, the medicine you take or the bioplastics you use.

So, yes, you probably use microbes and their superpowers daily without even realising. In this article, we listed 20 of the most fascinating bacterial superpowers and how they help not only bacteria but also us.

Bacteria know exactly where they are going

Bacteria have a so-called flagellum with which they can swim in liquids. This flagellum works together with the super responsive chemotaxis system.

This fascinating mechanism helps bacteria understand where beneficial nutrients or harmful compounds are. The bacterium then decides to swim towards or away from that compound. Chemotaxis is thus essential for the survival of bacteria.

Read Chemotaxis helps bacteria move towards goodies

Bacteria are high-speed swimmers

With the above-mentioned flagella, bacteria can move in liquids. When they rotate their flagella, they can swim in one direction which helps them find nutrients or escape harmful situations.

Interestingly, the Olympic recordist for 50 metres freestyle swims 1.17 body lengths per second. However, the bacterium Escherichia coli swims 15 body lengths per second and the tiny Bdellovibrio bacteriovorus swims even 10x faster, moving 160 body lengths in one second.

Read Bacteria wrap themselves in their swimming flagella

Floating veils for large bacteria to attach to and fetch nutrients

Bacteria produce oxygen and give superpowers to everyone

This may sound a little trivial because we take oxygen for granted. But bacteria known as cyanobacteria first produced oxygen on this planet. A large part of the atmosphere’s oxygen today is produced in oceans by these bacteria and other single-celled organisms.

You can also find more on cyanobacteria in this article.

Bacteria can produce electricity

Some bacteria can align into long filaments – so-called cable bacteria. This alignment allows bacteria to produce electrons on one side by oxidizing metals. They can then transport the electrons along the filament. Bacteria on the other side of the filament use these electrons for oxygen reduction.

Thus, bacteria produce an electric current within certain water sediments, which researchers measured. Maybe one day they can use these filaments in some kind of seawater-based batteries.

Read Cable bacteria – unusual bacteria conduct electricity

Bacteria use superpowers to align to the magnetic fields

Some bacteria, like the Magnetospirillum, that live in water, have so-called magnetosomes. These are storage units for iron crystal-like structures. The iron inside can align with a magnetic field and even along the magnetic Earth field.

These aligned magnetosomes then give magnetic momentum to the bacterium. Based on that, the bacterium aligns itself with the magnetic field and can find an optimal location in its environment.

Read How bacteria read and follow the Earth’s magnetic field

Bacteria can reduce and produce gold – highly valuable bacterial superpowers

In gold mines in Australia, researchers found bacteria that form biofilms on gold particles. For example, the bacteria Delftia acidovorans and Cupriavidus metallidurans can reduce toxic gold-ions to elementary gold.

This means that these bacteria are directly involved in the biogeochemical cycling of this precious metal.

Bacteria kill their competitors

To survive and grow, bacteria have learned to outcompete other bacteria and microbes. For this, they developed fascinating nanoweapons that kill their competitors and leave them as the sole survivor.

Interestingly, there are several different of these bacterial nanoweapons, all working slightly differently. Read more about this bacterial superpower:

Bacterial killer weapons as biocontrol to protect plants

Nanoweapons make the killer differences in bacterial siblings

Understanding the type 6 secretion system spike of a bacterial killer machine

Bacteria and contact-dependent growth inhibition: Death on a stick

Bacteria have various superpowers to protect their hosts

Microbes and bacteria live in and around bigger organisms like the human body, plants or animals. They developed fascinating mechanisms to protect their hosts and support them in different ways.

Bacteria might help them digest food, help them grow or fight off harmful intruders. For example, our bodies would not work without the microbiome – all those microbes and bacteria in and on us. Read more about the human microbiome:

How bacteria in your gut microbiome defend pathogens

Bacteria on your hands strengthen your unique skin microbiome

“Follow your gut instinct” – how your gut microbiome influences your mental health

How a healthy gut microbiome protects you and how to keep its superpower

Bacteria and their superpowers light the way

Some bacteria have the superpower to produce light in a process called bioluminescence.

Interestingly, bioluminescent bacteria often live with other organisms in symbiosis. For example, some bioluminescent bacteria occupy the lure of the female anglerfish. This fish also uses them as a fishing rod for hunting.

Bacteria withstand heat and cold

Whether too cold or too hot. Some bacteria really don’t care.

Certain bacteria can survive at temperatures as low as -20°C, which is why they are called hypothermophiles. On the contrary, other bacteria live in hot water steams up to 122°C. Similarly, these bacteria are hyperthermophiles.

These extremophiles have special repair enzymes to keep their DNA and cell envelope intact even at such extreme temperatures. Consequently, some of these enzymes are being used in research and are daily tools in each research lab. Learn more about extremophiles:

Even at the dark and cold bottom of the sea, microbes flourish

Bacteria tolerate harmful radiation

Another extreme-loving bacterium: the radiotolerant Deinococcus radiodurans. This bacterium has very efficient proteins to protect its DNA. Plus, it produces special DNA repair machines. They super quickly recognize and repair any damage in the DNA after exposure to radiation.

With these mechanisms, these extremophiles can survive exposure to ionizing radiation. Some bacteria even survive in the cooling systems of nuclear reactors.

Bacteria go to sleep by forming spores

Some bacteria can form so-called spores which are bacteria “on hold”.

Bacteria go into this state in times of greatest starvation or drought. Their aim is to keep its genetic material safe while turning down all non-essential functions. In this state, bacteria do not have an active metabolism nor do they interact with the environment. They solely wait for better times to come until nutrients become available again.

Bacteria produce some of our favourite foods

Did you know that bacteria produce many of the foods you are consuming? By fermenting sugars to alcohols or acids, lactic bacteria and some yeasts give a delicious taste to common foods like cheese, yoghurt and kefir, kombucha, kimchi and sauerkraut, beer and wine, as well as chocolate.

Reason enough to be grateful for bacterial superpowers to produce amazing foods.

Bacteria can endure high pressure in the deep sea

Researchers found bacteria that can live up to 10 km deep inside the ocean. Yes!

This means these bacteria can endure pressures of up to 100 MPa. But, researchers don’t know yet how these bacterial cells function at such high pressure. However, they think that the proteins inside these bacteria form some kind of super glue-like complexes. This would then make the bacterial content more viscous to endure the pressure.

Read Even at the dark and cold bottom of the sea, microbes flourish

Bacteria produce oil

Many microorganisms, amongst them bacteria, produce natural oils which is why they are called oleaginous microorganisms. Mainly algae, bacteria and yeasts can produce biodiesel, while fungi, and some algae can produce healthy omega-3 fatty acids.

Now, researchers focus on engineering these organisms to enhance the accumulation of produced lipids, biodiesel and omega-3 fatty acids.

Bacteria repair their DNA super efficiently

Bacteria have to endure all sorts of environmental stresses, for example, temperature changes, antibiotics or challenges by competitors. To ensure that under all circumstances, their DNA remains undamaged after an attack, bacteria developed incredibly efficient DNA repair and fixing machines. These machines recognise any small damage in the DNA.

Read

How does Salmonella deal with stress – a journey through the human body

Bacteria destroy proteins to understand the environment

Bacteria nucleate ice and let it rain

Some bacteria can trigger water to form ice crystals at temperatures close to the melting point. One of these bacteria is Pseudomonas syringae.

This bacterium has special proteins on its outer surface that interact with water and triggers ice formation. These bacteria are even used to produce artificial snow in winter sports areas around the world.

Bacteria keep our environment clean

Some bacteria surely love their heavy metals! Many bacteria have special enzymes to reduce toxic metal ions. These bacteria are even used to clean waste in industrial waters or mines and are the basis for green chemistry.

Read Microbial bioremediation: microbes cleaning-up our toxic messes

Bacteria can change our blood types for a short amount of time

Some bacteria live in our blood and when they get hungry, they start cleaving off sugar molecules from our red blood cells. While this is not harmful to us at all, in clinical tests, this may look like a different blood type than our original one.

However, as soon as the body produces new blood cells, they will have our original sugars and therefore our normal blood type.

Read Bacteria changing blood types

Some bacteria are super small

Super small but super powerful!

While bacteria have all these superpowers, I am most amazed by the fact that they are so tiny and yet SO powerful. All these superpowers in such a small box!

To actually see bacteria, we need microscopes. And to have really good photographs of them, we then need EXTREMELY good microscopes. Look at the bacterial cells in the pictures here! They are just about 2 micrometres long…

Thank bacteria and their superpowers

After having read this list of bacterial superpowers, are you even more amazed by our bacterial friends now? Which of these bacterial superpowers is your favourite? Which of them would you like to learn more about? Let us know in the comment section below or send us an email with your question. We’re looking forward to hearing from you!

The post The incredible superpowers of bacteria: unveiling nature’s tiny heroes appeared first on Bacterialworld.
Bacterialworld - A blog about bacteria: from scientific studies to vivid stories about the fascinating bacterial world